Modules by Name in Detail

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A	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
B	Authors	Type	Genre	Dll	Comment
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
C	Authors	Type	Genre	Dll	Comment
ClusteringAlgorithms	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	clusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
D	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
E	Authors	Type	Genre	Dll	Comment
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
F	Authors	Type	Genre	Dll	Comment
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
G	Authors	Type	Genre	Dll	Comment
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
H	Authors	Type	Genre	Dll	Comment
Histogram3DInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
I	Authors	Type	Genre	Dll	Comment
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
L	Authors	Type	Genre	Dll	Comment
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
M	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
N	Authors	Type	Genre	Dll	Comment
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
P	Authors	Type	Genre	Dll	Comment
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
R	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
S	Authors	Type	Genre	Dll	Comment
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Slightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
SoFiberVis	Olaf Konrad, Alexander Köhn, Jan Klein	InventorModule	DTIVisualization	SoFiberVis	3D visualization of tracked fibers
SpeechRecognizer	Felix Ritter	MLModule	Other	MLSpeechRecognizer
T	Authors	Type	Genre	Dll	Comment
TensorInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a tensor product interpolation polynomial in arbitrarily high space dimension.
TensorShapeExtract	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTIStable	Extraction of tensor shapes from a tensor field
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
V	Authors	Type	Genre	Dll	Comment
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
W	Authors	Type	Genre	Dll	Comment
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.

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