Modules by Name in Detail

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A	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
B	Authors	Type	Genre	Dll	Comment
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
C	Authors	Type	Genre	Dll	Comment
ClusteringAlgorithms	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	clusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
D	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
F	Authors	Type	Genre	Dll	Comment
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
I	Authors	Type	Genre	Dll	Comment
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
L	Authors	Type	Genre	Dll	Comment
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
M	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
R	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
S	Authors	Type	Genre	Dll	Comment
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
SoFiberVis	Olaf Konrad, Alexander Köhn, Jan Klein	InventorModule	DTIVisualization	SoFiberVis	3D visualization of tracked fibers
SpeechRecognizer	Felix Ritter	MLModule	Other	MLSpeechRecognizer
T	Authors	Type	Genre	Dll	Comment
TensorShapeExtract	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTIStable	Extraction of tensor shapes from a tensor field
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
V	Authors	Type	Genre	Dll	Comment
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
W	Authors	Type	Genre	Dll	Comment
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.

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