Modules by Keyword in Detail

add
Module	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
affinity
Module	Authors	Type	Genre	Dll	Comment
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
Analysis
Module	Authors	Type	Genre	Dll	Comment
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
anti-derivative
Module	Authors	Type	Genre	Dll	Comment
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
antiderivative
Module	Authors	Type	Genre	Dll	Comment
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
arithmetic
Module	Authors	Type	Genre	Dll	Comment
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
arithmetics
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
average
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
BaseOpMatrix
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
bbox
Module	Authors	Type	Genre	Dll	Comment
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
bootstrap
Module	Authors	Type	Genre	Dll	Comment
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bootstrapping
Module	Authors	Type	Genre	Dll	Comment
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bounding
Module	Authors	Type	Genre	Dll	Comment
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
boundingbox
Module	Authors	Type	Genre	Dll	Comment
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
box
Module	Authors	Type	Genre	Dll	Comment
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
buffer
Module	Authors	Type	Genre	Dll	Comment
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
bundle
Module	Authors	Type	Genre	Dll	Comment
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
cache
Module	Authors	Type	Genre	Dll	Comment
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
cdf
Module	Authors	Type	Genre	Dll	Comment
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
cluster
Module	Authors	Type	Genre	Dll	Comment
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
clustering
Module	Authors	Type	Genre	Dll	Comment
ClusteringAlgorithms	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	clusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.
coding
Module	Authors	Type	Genre	Dll	Comment
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
color
Module	Authors	Type	Genre	Dll	Comment
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
concat
Module	Authors	Type	Genre	Dll	Comment
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
concatenate
Module	Authors	Type	Genre	Dll	Comment
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
connection
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
Container
Module	Authors	Type	Genre	Dll	Comment
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
conversion
Module	Authors	Type	Genre	Dll	Comment
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
convert
Module	Authors	Type	Genre	Dll	Comment
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
coordinates
Module	Authors	Type	Genre	Dll	Comment
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
count
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
covariance
Module	Authors	Type	Genre	Dll	Comment
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
crop
Module	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
cropfiberendings
Module	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
Cropping
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
cumulative
Module	Authors	Type	Genre	Dll	Comment
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
cut
Module	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
density
Module	Authors	Type	Genre	Dll	Comment
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
derivative
Module	Authors	Type	Genre	Dll	Comment
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
derive
Module	Authors	Type	Genre	Dll	Comment
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
dicom
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
difference
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
Diffusion
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
distribution
Module	Authors	Type	Genre	Dll	Comment
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
divide
Module	Authors	Type	Genre	Dll	Comment
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
division
Module	Authors	Type	Genre	Dll	Comment
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
draw
Module	Authors	Type	Genre	Dll	Comment
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
DSI
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
DTI
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
ClusteringAlgorithms	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	clusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
SoFiberVis	Olaf Konrad, Alexander Köhn, Jan Klein	InventorModule	DTIVisualization	SoFiberVis	3D visualization of tracked fibers
TensorShapeExtract	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTIStable	Extraction of tensor shapes from a tensor field
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.
DTIInfo
Module	Authors	Type	Genre	Dll	Comment
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
evaluate
Module	Authors	Type	Genre	Dll	Comment
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
expectation
Module	Authors	Type	Genre	Dll	Comment
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
factor
Module	Authors	Type	Genre	Dll	Comment
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
feature
Module	Authors	Type	Genre	Dll	Comment
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
fiber
Module	Authors	Type	Genre	Dll	Comment
ClusteringAlgorithms	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	clusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSet	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	colorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.
FiberSet
Module	Authors	Type	Genre	Dll	Comment
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberSetContainer
Module	Authors	Type	Genre	Dll	Comment
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
FiberTracking
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberTreeQuery
Module	Authors	Type	Genre	Dll	Comment
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
field
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
file
Module	Authors	Type	Genre	Dll	Comment
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
Filter
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
Filtering
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
flow
Module	Authors	Type	Genre	Dll	Comment
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
function
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
ge
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
gradient
Module	Authors	Type	Genre	Dll	Comment
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
gradients
Module	Authors	Type	Genre	Dll	Comment
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
graph
Module	Authors	Type	Genre	Dll	Comment
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
grid
Module	Authors	Type	Genre	Dll	Comment
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
HARDI
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
helper
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
histogram
Module	Authors	Type	Genre	Dll	Comment
Histogram3DInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
image
Module	Authors	Type	Genre	Dll	Comment
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
index
Module	Authors	Type	Genre	Dll	Comment
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
info
Module	Authors	Type	Genre	Dll	Comment
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
information
Module	Authors	Type	Genre	Dll	Comment
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
integral
Module	Authors	Type	Genre	Dll	Comment
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
integrate
Module	Authors	Type	Genre	Dll	Comment
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
integration
Module	Authors	Type	Genre	Dll	Comment
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
interpolation
Module	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
Histogram3DInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
SimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Slightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a tensor product interpolation polynomial in arbitrarily high space dimension.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
isosurface
Module	Authors	Type	Genre	Dll	Comment
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.
length
Module	Authors	Type	Genre	Dll	Comment
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
linear
Module	Authors	Type	Genre	Dll	Comment
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
list
Module	Authors	Type	Genre	Dll	Comment
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
load
Module	Authors	Type	Genre	Dll	Comment
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
loop
Module	Authors	Type	Genre	Dll	Comment
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
LPH
Module	Authors	Type	Genre	Dll	Comment
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
manipulate
Module	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
map
Module	Authors	Type	Genre	Dll	Comment
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
mask
Module	Authors	Type	Genre	Dll	Comment
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
matrix
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
WeightMatrixByGrid	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines affinity matrix using the grid method
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
max
Module	Authors	Type	Genre	Dll	Comment
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
min
Module	Authors	Type	Genre	Dll	Comment
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
module
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
MPS
Module	Authors	Type	Genre	Dll	Comment
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
multilinear
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
multiply
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
multivariate
Module	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
Histogram3DInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
SimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Slightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a tensor product interpolation polynomial in arbitrarily high space dimension.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
network
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
NEX
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
NLU
Module	Authors	Type	Genre	Dll	Comment
SpeechRecognizer	Felix Ritter	MLModule	Other	MLSpeechRecognizer
node
Module	Authors	Type	Genre	Dll	Comment
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
nodes
Module	Authors	Type	Genre	Dll	Comment
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
number
Module	Authors	Type	Genre	Dll	Comment
FiberInfo	Anna Hallerbach, Jan Klein	MLModule	FiberTracking	MLFiberUtils	statistics of fiber bundle
NWV
Module	Authors	Type	Genre	Dll	Comment
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
orientation
Module	Authors	Type	Genre	Dll	Comment
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
partially
Module	Authors	Type	Genre	Dll	Comment
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
pattern
Module	Authors	Type	Genre	Dll	Comment
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
pdf
Module	Authors	Type	Genre	Dll	Comment
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
phantom
Module	Authors	Type	Genre	Dll	Comment
SoDrawFiberSet	Olaf Konrad, Markus Huellebrand	InventorModule	DTIOther	SoDrawFiberSet	Permits interactive generation of classes of fiber bundles.
philips
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
piecewise
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the graph of a piecewise multilinear function.
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Loads a vector of piecewise multilinear functions from a file.
NodesLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Creates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
point
Module	Authors	Type	Genre	Dll	Comment
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
polynomial
Module	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
DeriveInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Derives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
Histogram3DInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
ImageListInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Applies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial over a given box.
IntegrationInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Integrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Slightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a tensor product interpolation polynomial in arbitrarily high space dimension.
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
probability
Module	Authors	Type	Genre	Dll	Comment
Histogram3DLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
product
Module	Authors	Type	Genre	Dll	Comment
MultiplyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Multiplies two multivatiate interpolation polynomials.
Q-BALL
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
QBALL
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
Quantification
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
query
Module	Authors	Type	Genre	Dll	Comment
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
refine
Module	Authors	Type	Genre	Dll	Comment
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
refinement
Module	Authors	Type	Genre	Dll	Comment
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
registration
Module	Authors	Type	Genre	Dll	Comment
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
resample
Module	Authors	Type	Genre	Dll	Comment
ResampleLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Resamples a given piecewise multilinear function with a different (coarser) refinement strategy.
rotation
Module	Authors	Type	Genre	Dll	Comment
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
save
Module	Authors	Type	Genre	Dll	Comment
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SaveLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Saves a vector of piecewise multilinear functions from a file.
scale
Module	Authors	Type	Genre	Dll	Comment
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
ScalePointInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Utility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
search
Module	Authors	Type	Genre	Dll	Comment
ModuleSuggest	Christoph Brachmann	MacroModule			Suggest a module based on most common field connections
select
Module	Authors	Type	Genre	Dll	Comment
SelectLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Selects single piecewise multilinear functions out of a list or concatenates two lists.
set
Module	Authors	Type	Genre	Dll	Comment
FiberSetContainerToFiberSet	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainer	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Converts FiberSet to FiberSetContainer
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
setfibercolor
Module	Authors	Type	Genre	Dll	Comment
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
setfiberness
Module	Authors	Type	Genre	Dll	Comment
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
Siemens
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
simplify
Module	Authors	Type	Genre	Dll	Comment
SimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Slightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
Smolyak
Module	Authors	Type	Genre	Dll	Comment
SmolyakInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
space
Module	Authors	Type	Genre	Dll	Comment
FeatureSpaceMatrix	Jan Klein, Philip Bittihn, Peter Ledochowitsch	MLModule	FiberClustering	MLFiberClustering	determines the feature space from a given fiber set
specific
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
speech
Module	Authors	Type	Genre	Dll	Comment
SpeechRecognizer	Felix Ritter	MLModule	Other	MLSpeechRecognizer
sphere
Module	Authors	Type	Genre	Dll	Comment
HistogramSphereLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
stream
Module	Authors	Type	Genre	Dll	Comment
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
streamtubes
Module	Authors	Type	Genre	Dll	Comment
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
subtract
Module	Authors	Type	Genre	Dll	Comment
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
sum
Module	Authors	Type	Genre	Dll	Comment
AddInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Adds two multivatiate interpolation polynomials.
AddLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Adds (or subtracts) several piecewise multilinear functions.
table
Module	Authors	Type	Genre	Dll	Comment
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
tag
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
Tensor
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
Bootstrap	Jan Klein	MLModule	DTIImageProcessing	MLDTI	From a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysis	Mathias Schlueter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Reconstucts the Diffusion Tensor
DTIInfo	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Indicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FiberCache	Jan Klein	MLModule	FiberTracking	MLFiberUtils	buffers incoming FiberSets or FiberSetContainers
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FibersBoundingBox	Jan Klein	MLModule	FiberTracking	MLFiberUtils	determines bounding box of fiber set (container)
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
InterpolatePolynomialToLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Converts a multivariate polynomial into a piecewise multilinear function.
LoadFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Module supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibers	Jan Klein	MLModule	FiberTracking	MLFiberUtils	Allows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColor	Daniel Betz, Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Color values of input image can be mapped to color values of fiber points
SetFiberness	Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	Each fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
TensorInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Creates a tensor product interpolation polynomial in arbitrarily high space dimension.
TensorShapeExtract	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTIStable	Extraction of tensor shapes from a tensor field
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
test
Module	Authors	Type	Genre	Dll	Comment
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
threshold
Module	Authors	Type	Genre	Dll	Comment
ThresholdLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
trace
Module	Authors	Type	Genre	Dll	Comment
AverageSiemensDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Determines from a given Siemens DTI data set with more than one repetition the average image
Tracking
Module	Authors	Type	Genre	Dll	Comment
FiberBundleQuantification	Simon Hermann, Jan Klein	MLModule	DTIQuantification	MLFiberUtilsExtension	automatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3D	Simon Hermann, Jan Klein	MLModule	FiberTracking	MLFiberUtils	Fiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
TensorTestPattern	Olaf Konrad, Mathias Schlüter	MLModule	DTIOther	MLDTI	Generates a tensor / vector valued test pattern
TensorTractography	Jan Klein, Olaf Konrad, Mathias Schlüter	MLModule	FiberTracking	MLFiberTrackingStable	Efficient fiber tracking using global image volume.
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
transformation
Module	Authors	Type	Genre	Dll	Comment
TensorTransform	Uwe Siems, Sebastiano Barbieri	MLModule	DTIImageProcessing	MLDTI	Rotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
transition
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
translate
Module	Authors	Type	Genre	Dll	Comment
BoundingBoxLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Changes the bounding box of a multilinear function.
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
translation
Module	Authors	Type	Genre	Dll	Comment
TranslateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Translates a multivatiate interpolation polynomial.
tree
Module	Authors	Type	Genre	Dll	Comment
FiberFromIndex	Jan Klein	MLModule	DTIVisualization	MLFiberTree	Determines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTree	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfo	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQuery	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2	Jan Klein	MLModule	DTIVisualization	MLFiberTree	The module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
tubes
Module	Authors	Type	Genre	Dll	Comment
FibersToGraph	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of a given fiber set into a graph
Tuch
Module	Authors	Type	Genre	Dll	Comment
DisplayModuleMatrix	Jan Klein	MLModule	DTIImageProcessing	MLDiffusionHelpers	Displays BaseOpMatrix
value
Module	Authors	Type	Genre	Dll	Comment
EvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Evaluates a piecewise multilinear function. Also shows some information bits.
GraphInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Supplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
PartiallyEvaluateInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Partially evaluates a piecewise multilinear function.
variance
Module	Authors	Type	Genre	Dll	Comment
CovarianceMatrixInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunction	Tim Kroeger	MLModule		MLStochasticCollocation	Computes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
vector
Module	Authors	Type	Genre	Dll	Comment
TensorShapeExtract	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTIStable	Extraction of tensor shapes from a tensor field
VectorToColor	Mathias Schlüter, Jan Klein	MLModule	DTIImageProcessing	MLDTI	Visualization of vector fields by color coding
vendor
Module	Authors	Type	Genre	Dll	Comment
DecodeVendorSpecificDicomTags	Marcus Barann, Jan Klein	MLModule	DICOM	MLDTI	Decodes vendor specific dicom tags
voice
Module	Authors	Type	Genre	Dll	Comment
SpeechRecognizer	Felix Ritter	MLModule	Other	MLSpeechRecognizer
voxel
Module	Authors	Type	Genre	Dll	Comment
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
voxelization
Module	Authors	Type	Genre	Dll	Comment
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
voxelize
Module	Authors	Type	Genre	Dll	Comment
VoxelizeFibers	Jan Klein	MLModule	DTIVisualization	MLFiberUtilsExtension	Counts number of (interpolated) fiber points per voxel
WeightMatrixByGrid
Module	Authors	Type	Genre	Dll	Comment
WeightMatrixByGridMacro	Jan Klein, Peter Ledochowitsch, Philip Bittihn	MacroModule	FiberClustering		Diagram added to WeightMatrixByGrid for importance function viewing
world
Module	Authors	Type	Genre	Dll	Comment
TensorTransformAdapter	Jan Klein	MacroModule			Adapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
wrap
Module	Authors	Type	Genre	Dll	Comment
WrapFiberSet	Jan Klein	MacroModule	FiberClustering		A fiber set can be wrapped by a colored isosurface.
XMarker
Module	Authors	Type	Genre	Dll	Comment
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
XMarkerList
Module	Authors	Type	Genre	Dll	Comment
FiberSetToXMarker	Jan Klein	MLModule	FiberTracking	MLFiberUtils	converts all fiber points of given fiber set into a XMarkerList
XMarkersToFibers
Module	Authors	Type	Genre	Dll	Comment
FlowPathsToFibers	Johann Drexl	MLModule		MLFiberUtils	Converts flow paths into a fiber set.
XYZ
Module	Authors	Type	Genre	Dll	Comment
TransformPhilipsDTI	Jan Klein	MLModule	DTIImageProcessing	MLDTI	Transformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
zero
Module	Authors	Type	Genre	Dll	Comment
FactorZeroInterpolationPolynomial	Tim Kroeger	MLModule		MLStochasticCollocation	Factors a zero out of a multivatiate interpolation polynomial.