Modules by Keyword in Detail

affinity
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
Analysis
ModuleAuthorsTypeGenreDllComment
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
arithmetic
ModuleAuthorsTypeGenreDllComment
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
average
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BaseOpMatrix
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
bbox
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
bootstrap
ModuleAuthorsTypeGenreDllComment
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bootstrapping
ModuleAuthorsTypeGenreDllComment
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bounding
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
boundingbox
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
box
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
buffer
ModuleAuthorsTypeGenreDllComment
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
bundle
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
cache
ModuleAuthorsTypeGenreDllComment
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
cluster
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
clustering
ModuleAuthorsTypeGenreDllComment
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
coding
ModuleAuthorsTypeGenreDllComment
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
color
ModuleAuthorsTypeGenreDllComment
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
connection
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
Container
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
convert
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
coordinates
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
count
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
crop
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
cropfiberendings
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
Cropping
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
cut
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
dicom
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
Diffusion
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
draw
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
DSI
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
DTI
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
SoFiberVisOlaf Konrad, Alexander Köhn, Jan KleinInventorModuleDTIVisualizationSoFiberVis3D visualization of tracked fibers
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
DTIInfo
ModuleAuthorsTypeGenreDllComment
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
feature
ModuleAuthorsTypeGenreDllComment
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
fiber
ModuleAuthorsTypeGenreDllComment
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
FiberSet
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetContainer
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberTracking
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberTreeQuery
ModuleAuthorsTypeGenreDllComment
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
field
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
file
ModuleAuthorsTypeGenreDllComment
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
Filter
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
Filtering
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
flow
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
ge
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
gradient
ModuleAuthorsTypeGenreDllComment
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
gradients
ModuleAuthorsTypeGenreDllComment
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
graph
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
grid
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
HARDI
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
helper
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
index
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
info
ModuleAuthorsTypeGenreDllComment
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
isosurface
ModuleAuthorsTypeGenreDllComment
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
length
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
load
ModuleAuthorsTypeGenreDllComment
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
LPH
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
manipulate
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
map
ModuleAuthorsTypeGenreDllComment
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
mask
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
matrix
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
max
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
min
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
module
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
MPS
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
network
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
NEX
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
NLU
ModuleAuthorsTypeGenreDllComment
SpeechRecognizerFelix RitterMLModuleOtherMLSpeechRecognizer
number
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
NWV
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
orientation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
pattern
ModuleAuthorsTypeGenreDllComment
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
phantom
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
philips
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
probability
ModuleAuthorsTypeGenreDllComment
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
Q-BALL
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
QBALL
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
Quantification
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
query
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
registration
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
rotation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
save
ModuleAuthorsTypeGenreDllComment
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
search
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
set
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
setfibercolor
ModuleAuthorsTypeGenreDllComment
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
setfiberness
ModuleAuthorsTypeGenreDllComment
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
Siemens
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
space
ModuleAuthorsTypeGenreDllComment
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
specific
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
speech
ModuleAuthorsTypeGenreDllComment
SpeechRecognizerFelix RitterMLModuleOtherMLSpeechRecognizer
stream
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
streamtubes
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
tag
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
Tensor
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
test
ModuleAuthorsTypeGenreDllComment
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
trace
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
Tracking
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
transformation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
transition
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
tree
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
tubes
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
Tuch
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
vector
ModuleAuthorsTypeGenreDllComment
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
vendor
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
voice
ModuleAuthorsTypeGenreDllComment
SpeechRecognizerFelix RitterMLModuleOtherMLSpeechRecognizer
voxel
ModuleAuthorsTypeGenreDllComment
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
voxelization
ModuleAuthorsTypeGenreDllComment
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
voxelize
ModuleAuthorsTypeGenreDllComment
VoxelizeFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionCounts number of (interpolated) fiber points per voxel
WeightMatrixByGrid
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
world
ModuleAuthorsTypeGenreDllComment
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
wrap
ModuleAuthorsTypeGenreDllComment
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
XMarker
ModuleAuthorsTypeGenreDllComment
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
XMarkerList
ModuleAuthorsTypeGenreDllComment
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
XMarkersToFibers
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
XYZ
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)

View modules by

Genre 8 genres
Name details 44 names
Keywords details 115 keywords
Thu Mar 06 22:41:26 2025