Figure 4.6. Preferences — General

User Name

The user currently signed in at this computer.

Resources

The optimal Resources settings depend on the system and platform. Use the default settings if in doubt.

Image Processing

Image Processing Cache Size (MB)

Defines the memory available for caching (intermediate) ML image tiles/pages within a network of image processing modules. Reducing the cache size will slow down the image processing pipelines because images will be recalculated more frequently in individual modules. Cache sizes too large might cause a collapse of your system because of reduced memory for other programs. For 2 GB RAM, a value of 512 MB is well-tested. For details, see the ML Programming Guide, “Optimizing Data Flow in Module Networks”.

Maximum Threads Used for Image Processing

Gives the number of parallel threads for image processing. For more details on multi-threading, see Section 27.7, “Multi-threading in MeVisLab”.

Use classic ML host

If checked, the classic ML host (the only available option before MeVisLab 2.5) is used. Otherwise, a new ML host is used that implements an optimized multi-threading for the ML.

Visualization

Total Texture Memory on Graphics Card (MB)

Gives the amount of texture memory (texture RAM, TRAM) on the graphics card to be used for MeVisLab texture processing, for example in the View2D module.

Volume Renderer Texture Cache Usage (%)

Defines the percentage of texture memory that the GVR volume renderer may use.

IDE Options

Auto reload files when changed

If selected, the .def, .script, and .py files of a module are reloaded when reloading the module panel (by double-clicking the module or selecting Show Window → Panel from the module context menu).

	Note
	Networks .mlab files (for macro modules) are not reloaded.

Auto save MeVisLab documents

If selected, MeVisLab networks are auto-saved as <NetworkName>.mlab.auto upon major changes. This allows for restoring in case of system crashes. Auto-saved copies are deleted when the according networks are saved.

Show network selector when switching documents via CTRL-Tab

If selected, pressing CTRL+TAB (or SHIFT+CTRL+TAB) does not switch directly to the next or previous network document, but shows a network selector preview. For more details, see Section 3.15, “Network Selector”.

Restore module panels

If selected, opening a network restores all module panels (including window size and position) to the state (open, minimized, positions, etc.) when the network was last saved.

Enable debugging of widgets

Enables/disables debugging module panels. When enabled, CTRL+left-clicking a GUI control in a module panel opens the .script file in the default text editor at the line in which the GUI control is defined.

Auto Load Recent Files

Gives the number of recent networks to be loaded automatically on MeVisLab startup. This may considerably slow down the startup.

	Note
	If loading a network leads to a crash, this option can be harmful, because on the next start of MeVisLab, that network will automatically be loaded, which in turn will lead to a crash! Use this option with care!

Display System Info...

Displays system information regarding the Open GL vendor, the available GL extensions, and more in an extra window.

Check External Tools...

Starts the Tools Check tool that checks for software necessary for certain build tasks. This tool is also part of the ToolRunner. See the ToolRunner Documentation for details.

MeVisLab modules are organized in packages. These are defined as certain folder structures (see the Package Structure documentation for details). The Packages category gives an overview over the available and active packages.

Figure 4.7. Preferences — Packages

The packages are separated into:

If a package with the same PackageIdentifier is found more than once, the last package found will overwrite the previously loaded packages (in the order given above, see the Package Structure documentation for details). These will be grayed out and labeled “(Overwritten)”.

Create New Package

Opens the Package Wizard, see Section 25.5, “Packages”.

Add Existing User Packages

Opens the default file browser to add a user package. Folders are read recursively and all packages below them are automatically included.

Remove

Removes the selected user package from the path of MeVisLab. (Installed packages cannot be removed.) Removed user packages can always be re-added later.

The Module Groups category lists optional groups of modules that are not loaded by default. Check the corresponding group to get access to modules of the group.

Figure 4.8. Preferences — Module Groups

Scroll to the right to see additional comments and the number of modules for each group.

After confirming the selection with OK, the package groups of the selected modules and the user packages are scanned and loaded.

Figure 4.9. Preferences — Supportive Programs

Internal Text Editor

Use internal text editor (MATE)

If selected, the internal text editor MATE is used, which offers many useful features for MeVisLab files. Recommended! See Chapter 26, MATE for details.

Handled Extensions

Allows to define a list of file extensions for which MATE is automatically opened.

External Programs

Allows to define extern applications plus program arguments for file types used in MeVisLab. Click Browse to select the applications manually, or Detect to autodetect applications that work especially well with MeVisLab.

Note

On Linux it can happen that an external program depends on a third party library that MeVisLab provides. If problems occur, e.g., because a KDE program loads an incompatible Qt library from MeVisLab, then use a shell script that clears LD_LIBRARY_PATH before it calls the external program. For example, to safely run konqueror from MeVisLab, place the following script in ~/bin and make sure ~/bin is the first entry in PATH before running MeVisLab. #!/bin/sh LD_LIBRARY_PATH= konqueror

Arguments are options added when starting the program. They can be entered manually or are added by the Detect feature.

Extensions lists the extensions for which the assigned program will be used. This overrides your system settings, but only in the MeVisLab context.

Network Proxy

Allows to set a proxy server for HTTP connections of the WebKit implementation of Qt.

Figure 4.10. Preferences — Paths

Default File Dialog Path

Sets the default path in the file dialog. If none is entered, the path last used will be offered.

Screenshot Path

Sets the path for files of the View Screenshot Gallery, see Chapter 19, Screenshot Gallery.

Snippets Path

Sets the path for network snippets, see Chapter 24, Snippets List

DicomBrowser Path

Sets the path where the DICOMBrowser module and the OpenImage module look for DICOM data by default.

Applications Settings Path

Sets the path in which MeVisLab applications save their settings.

Logfile

Sets the path to the logfile written by MeVisLab.

	Note
	You can also set the path to the logfile in the .prefs file with logfile = <absolutePath/file.log>.

Figure 4.11. Preferences — Scripting

Scripting

Default Python Code

Sets a default Python code snippet that is used in the scripting console as default.

Additional Python Path

Add the path to an additional Python package so it can be found in the import statement.

Python Debugger Code

Sets Python debugger code as described in the Scripting Reference.

	Note
	The 'Additional Python Path' and the 'Python Debugger Code' are for attaching an external debugger to Python. Using an external Python debugger is obsolete since MATE has a built-in debugger for Python (see Section 26.8, “Python Debugger”).

Figure 4.12. Preferences — Network Appearance

Mini Map

Show Mini Map

The Mini Map is an overview map. See also Section 3.13, “Using the Mini Map”.

The following settings for the Mini Map are available:

Show Mini Map

Position

Defines the position of the Mini Map: Upper Right (default), Lower Right, Upper Left, Lower Left.

Show parent navigation frames

(For macro modules only) Shows the hierarchy of the opened networks. For example, when adding a View2D module, opening its internal network and there the internal network of View2DExtensions, the hierarchy of involved macro modules will be displayed in small frames next to the usual mini map (which might not be shown, depending on its mode).

Network Rendering Style

Style

Offers four options for styling the network rendering:

All four styles are fully functional in terms of editing, connecting modules, displaying a Mini Map, etc. However, it is recommended to use the print styles only when screencapturing and printing the network.

Halo

Offers two options for styling the halo of highlighted modules:

To change the halo colors of the selected modules and the modules attached to them, edit the settings of Selected, Source, and Destination by clicking on the respective color field.

Global Zoom

Factor

Sets a global zoom factor. Only applicable to modules and networks that do not fill the network space automatically. Other modules/networks will be displayed with the given global zoom factor upon double-clicking the networks space or using the button (Show the whole network) in the toolbar.

Default Colors

Groups

Sets the background color for module groups, see Section 3.11, “Using Groups”. The default is green.

Notes

Sets the background color for notes, see Section 3.12, “Using Notes”. The default is yellow.

Modules

Font Size

Sets the font size of the module name in the display (number referring to a zoom of 100%).

Snap to grid

Sets the grid size in the workspace to which the modules snap when moved.

Show ML image state

Shows the image states by coloring the connectors.

Badge Script

Select a script that provides a badge icon for modules. Badge icons are intended to make users aware of certain properties of a module. See Section 4.3.7.1, “How to define your own badge scripts” for how to define your own badge scripts.

Connector Details

Show connector detail info

Enables detailed information for ML image, Inventor, or Base objects currently available on the connectors when a single module is selected.

Detail Font Size

Sets the font size for the connector detail info.

Details On Zoom

Sets the threshold zoom factor below which the details are not displayed.

Verbose Details On Zoom

Sets the threshold zoom factor below which the verbose details are not displayed.

Connector Image Preview

Show Connector Image Preview

Shows an image preview for an image connector when a single module is selected.

Image Preview Thumbnail Size

Sets the size of the image preview thumbnails in pixel.

	Note
	All sizes and fonts relate to a zoom factor of 100%.

BadgeScript {
  title = "Some example badge script"
  source = "$(LOCAL)/MyBadgeScript.py"
}      

from mevis import *

def run(moduleName):
    author = MLAB.moduleInfo(moduleName).get("author")
    if author and "John" in author:
        return {
            "icon": "$(LOCAL)/johns.png", 
            "description": "Module written by a John" 
        }

    return None
      

Figure 4.13. Preferences — Network Interaction

Module Placement

Placement of newly created or pasted modules

Defines where newly created or pasted modules are placed in the network:

Module Arrangement Spacing

Horizontal / Vertical

Enter arbitrary values to adjust the distances between modules for the autoArrange scripting command. (The settings do not directly translate to pixels but depend on the zoom and other factors.)

Network Zoom Style

Zoom to

Defines to which position the zoom should be centered around. Available options are to zoom to the center of the network or to zoom to the current cursor location.

Network Mouse Gestures

Use mouse gestures to close current network document

Enables or disables the use of mouse gestures (see Section 3.17, “Network Mouse Gestures”).

This option only has an effect on Windows systems because on Linux and Mac OS X, the context menus are opened on right-click and not on right-button release.

Interaction Device

Device Selection

Allows selecting special interaction devices (mice, touch pads, especially Apple devices). For each selected option, the available features are listed beneath.

Figure 4.14. Preferences — Error / Debug Handling

cout (standard output stream) and cerr (standard output stream for errors) are standard outputs in C++. The difference is that std::cout is a buffered stream especially useful for general output, while std::cerr is not buffered and therefore especially useful for error messages. The outputs are independent of each other, so both can be directed to other targets.

Redirect cout

Enables the redirect of the cout stream.

Send to MeVisLab debug output

Redirects cout to the Debug Output (default).

Send to Visual C++ debug console (Windows only)

(Only if MeVisLab is started from within Visual C++) Redirects cout to the Visual C++ Debug Console (on Windows).

Use default cout

Redirects cout to the default output (for example a console). Needs to be activated explicitly, otherwise only the redirect will be output.

Redirect cerr

Enables redirect of the cerr stream.

Send to MeVisLab debug output

Redirects cerr to the Debug Output. (default).

Send to Visual C++ debug console (Windows only)

(Only if MeVisLab is started from within Visual C++) Redirects cerr to the Visual C++ debug console.

Use default cerr

Redirects cerr to the default output (for example a console). Needs to be activated explicitly, otherwise only the redirect will be output.

Exception Handling

Catch inventor exceptions and Catches core exceptions

Exceptions are handled as selected for each kind of exception:

On Warnings, On Errors, etc.

Defines what is to happen upon warnings, errors, etc. Especially helpful if no source code for real tracing is available. Possible settings: Continue, Abort, Exit(0), Exit(ErrCode).

Symbol Controlled Debugging

Print all debug output

Prints out all debug outputs from the code (for example everything tagged with ML_DEBUG).

Use symbol controlled debugging

The debugging is done based on symbols, that is special classes. Enter the debug symbols to filter for in the text field, for example ML_ERRORTEST.

	Note
	Refer to the ML Guide for detailed information on symbol-controlled debugging.

Figure 4.15. Preferences — Shortcuts

The shortcut editor allows to set and/or change shortcuts for various actions. It also shows which shortcuts are active at the moment.

To remove a shortcut for an action, select the action, select its shortcut key (if there are multiple), and press Remove Key.

To set a keyboard shortcut, select the action and click into the field that says Click to add key. Then, press the key or key combination you want to use for this action. This can be done multiple times, adding a shortcut for the action at each repetition.

	Note
	The same shortcut editor is available in MATE.

Reset To Default

Resets the keyboard shortcut for the selected action to its default.

Remove Key

Removes the currently shown shortcut key for the selected action.

Reset All To Default

Resets all keyboard shortcuts to their defaults.