MeVisLab Toolbox Reference
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ML-Module base class to simplify development of modules encapsulating an algorithm with dedicated input and output interface. More...
#include <mlAlgorithmModule.h>
Classes | |
class | Error |
Data structure to indicate an error within an AlgorithmModule derivative's implementation of interface methods. More... | |
class | InputObjectError |
Data structure indicating an error because of an invalid input object. More... | |
class | InputParameterError |
Data structure indicating an error because of an invalid input parameter. More... | |
class | InternalError |
Data structure indicating an internally caused error. More... | |
Public Member Functions | |
AlgorithmModule (int numInputImages, int numOutputImages) | |
Forwards given parameters to base class constructor. | |
~AlgorithmModule () override | |
void | handleNotification (Field *field) override |
Never overwrite this method in derivative! | |
void | activateAttachments () override |
Never overwrite this method in derivative! | |
void | calculateOutputImageProperties (int outputIndex, PagedImage *outputImage) override |
Never overwrite this method in derivative! | |
Public Member Functions inherited from ml::Module | |
MLMetaProfilePtr & | getMetaProfile () const |
Returns the meta profile for the base operator. | |
const char * | getTypeNameFast () const |
Macro to declare methods for the ML runtime type system (see mlRuntimeSubClass.h). | |
Module (int numInputImages, int numOutputImages) | |
Constructor: Initializes numInputImages input images and numOutputImages output images of the module. | |
~Module () override | |
Destructor: Destroys this module. | |
InputConnectorField * | getInputImageField (MLint i) const |
Returns the field representing input image i . i must be a valid index. | |
OutputConnectorField * | getOutputImageField (MLint i=0) const |
Returns field representing output image i . i must be a valid index. | |
MLint | getNumInputImages () const |
Returns number of input images of this module. | |
MLint | getNumOutputImages () const |
Returns number of output images of this module. | |
PagedImage * | getOutputImage (MLint outputIndex=0) const |
Returns output image outputIndex . The index needs to be in the range [0, getNumOutputImages()-1]. | |
InputConnectorField * | addInputImage (const char *name=nullptr) |
Adds a new input image with name to the module. | |
OutputConnectorField * | addOutputImage (const char *name=nullptr) |
Adds a new output image with name to the module. | |
PagedImage * | getInputImage (MLint inputIndex, bool getReal=false) const |
Returns the output image of the module connected to input inputIndex . | |
PagedImage * | getUpdatedInputImage (MLint inputIndex, bool getReal=false) const |
Convenience method for safe access to the input image at index inputIndex . | |
MLErrorCode | processAllPages (int outputIndex=-1, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
Processes all pages of a module for easy implementation of page-based image processing of complete images. | |
MLErrorCode | processAllPages (ProcessAllPagesHandler &handler, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
Process input images with a ProcessAllPagesHandler handler on a temporary output image (which allocates no data) For details, see processAllPages(-1) above. | |
MLErrorCode | processMissingPages (int outputIndex=0, SubImageBox region=SubImageBox(), MLRequestProgressCB *progressCallback=nullptr, void *progressCallbackUserData=nullptr) |
Processes all missing pages on the given output image. | |
void | clearOutputImage (MLint i=0) |
Clear cached output image pages of output image i . | |
MLint | getOutputImageInplace (MLint outputIndex=0) const |
Return optimization flag: Return index of input image whose input tile is used also as output page for output outputIndex in calculateOutputSubImage() (instead of allocating its own memory). | |
MLint | getBypass (MLint outputIndex=0) const |
Returns the currently bypass index or -1 if bypassing is disabled (default). | |
THREAD_SUPPORT | getThreadSupport () const |
Returns the multithreading mode supported by this module, default is NO_THREAD_SUPPORT. | |
bool | areRecursiveHandleNotificationsPermitted () const |
Returns if recursive entries in handleNotification are permitted. | |
MLint | getHandleNotificationEntryCounter () const |
A counter returning the current number of (recursive re)entries in handleNotification. | |
PERMITTED_TYPES | getVoxelDataTypeSupport () const |
Returns the current state of supported voxel data types. | |
bool | isSupportedVoxelDataType (MLDataType dt) const |
Check if a given data type is supported on the module as configured with setVoxelDataTypeSupport. | |
virtual INPUT_HANDLE | handleInput (int, INPUT_STATE) const |
This method may be reimplemented to enable support for invalid input images on the module. | |
INPUT_STATE | getInputState (MLint index) |
Returns the current state of the input connection. | |
INPUT_STATE | getUpdatedInputState (MLint index) |
Returns the updated state of the input image by calling updateImageProperties(index) and returning getInputState(index) afterwards. | |
bool | isInputImageField (Field *field) const |
Returns if the given field is an input image field. This can be used in handleNotification(), to check if one of the input images has changed. | |
void | touchOutputImageFields () const |
Touch all output image fields to indicate that the images have changed. | |
virtual void | beginSaveFields () |
Called before all fields data contents of this modules are saved. | |
virtual void | endSaveFields () |
Called after saving all field contents of this module. | |
Public Member Functions inherited from ml::FieldContainer | |
FieldContainer () | |
Constructor. | |
~FieldContainer () override | |
Destructor: Deletes all added fields. | |
std::string | whoAmI (bool withInstanceName=true) const |
Returns type and instance name of format "ClassTypeName(instanceName)" if the instance name is not empty and withInstanceName is true. | |
Field * | addField (const char *name, const char *type, const char *value) |
Adds a new field with name name , type type and value value (coded as string) to the container. | |
Field * | addField (Field *field) |
Adds a field , the ownership of the field is passed to the FieldContainer. | |
BoolField * | addBool (const char *name) |
Creates a BoolField with name and adds it to the container. Default value is false. | |
BoolField * | addBool (const char *name, bool value) |
Creates a BoolField with name and adds it to the container. | |
IntField * | addInt (const char *name) |
Creates an IntField with name and adds it to the container. Default value is 0. | |
IntField * | addInt (const char *name, MLint value) |
Creates an IntField with name and adds it to the container. | |
EnumField * | addEnum (const char *name, const char *const *enumerationItemNames, MLint numEnumerationItems) |
Creates an EnumField field with name and adds it to the container. | |
EnumField * | addEnum (const char *name, const std::vector< std::string > &enumerationItemNames) |
Creates an EnumField field with name and adds it to the container. | |
template<typename EnumType > | |
TypedEnumField< EnumType > * | addEnum (const char *name, const EnumValues< EnumType > &values, EnumType initialValue) |
Creates a TypedEnumField field with name and adds it to the container. | |
FloatField * | addFloat (const char *name) |
Creates a FloatField with name and adds it to the container. Default value is 0.f. | |
FloatField * | addFloat (const char *name, float value) |
Creates a FloatField with name and adds it to the container. | |
ProgressField * | addProgress (const char *name) |
Creates a float ProgressField with name and adds it to the container. Default value is 0.f. | |
ProgressField * | addProgress (const char *name, float value) |
Creates a float ProgressField with name and adds it to the container. | |
DoubleField * | addDouble (const char *name) |
Creates a DoubleField with name and adds it to the container. Default value is 0. | |
DoubleField * | addDouble (const char *name, double value) |
Creates a DoubleField with name and adds it to the container. | |
StringField * | addString (const char *name) |
Creates a StringField with name and adds it to the container. Default value is empty string. | |
StringField * | addString (const char *name, const std::string &value) |
Creates a StringField with name and adds it to the container. | |
NotifyField * | addNotify (const char *name) |
Creates a NotifyField field with name and adds it to the container. | |
TriggerField * | addTrigger (const char *name) |
Creates a TriggerField field with name and adds it to the container. | |
BaseField * | addBase (const char *name) |
Creates a Base field with name and adds it to the container. Default value is NULL. | |
BaseField * | addBase (const char *name, Base *value) |
Creates a Base field with name and adds it to the container. | |
BaseField * | addBase (const char *name, const RefCountedBasePtr &value) |
Creates a Base field with name and adds it to the container. Sets the value from intrusive pointer. | |
template<typename T > | |
BaseField * | addBaseWithAllowedType (const char *name, T *value=nullptr) |
As above, but also sets the allowed type of the field. | |
template<typename T > | |
BaseField * | addBaseWithAllowedType (const char *name, const ::boost::intrusive_ptr< T > &value) |
As above, but also sets the allowed type of the field. | |
template<typename T > | |
TypedBaseField< T > * | addTypedBase (const char *name) |
Creates a TypedBaseField with name and adds it to the container. Default value is NULL. | |
template<typename T > | |
TypedBaseField< T > * | addTypedBase (const char *name, T *value) |
Creates a TypedBaseField with name and adds it to the container. | |
template<typename T > | |
TypedBaseField< T > * | addTypedBase (const char *name, const ::boost::intrusive_ptr< T > &value) |
Creates a TypedBaseField with name and adds it to the container. Sets the value from intrusive pointer. | |
SoNodeField * | addSoNode (const char *name) |
Creates a SoNodeField with name and adds it to the container. Default value is NULL. | |
SoNodeField * | addSoNode (const char *name, SoNode *value) |
Creates a SoNodeField with name and adds it to the container. | |
PointerField * | addPointer (const char *name) |
Creates a PointerField with name and adds it to the container. | |
Vector2Field * | addVector2 (const char *name) |
Creates a Vector2Field with name and adds it to the container. | |
Vector2Field * | addVector2 (const char *name, const Vector2 &value) |
Creates a Vector2Field with name and adds it to the container. | |
Vector2Field * | addVector2 (const char *name, double x, double y) |
Creates a Vector2Field with name and adds it to the container. | |
Vector3Field * | addVector3 (const char *name) |
Creates a Vector3Field with name and adds it to the container. | |
Vector3Field * | addVector3 (const char *name, const Vector3 &value) |
Creates a Vector3Field with name and adds it to the container. | |
Vector3Field * | addVector3 (const char *name, double x, double y, double z) |
Creates a Vector3Field with name and adds it to the container. | |
Vector4Field * | addVector4 (const char *name) |
Creates a Vector4Field with name and adds it to the container. | |
Vector4Field * | addVector4 (const char *name, const Vector4 &value) |
Creates a Vector4Field with name and adds it to the container. | |
Vector4Field * | addVector4 (const char *name, double x, double y, double z, double w) |
Creates a Vector4Field with name and adds it to the container. | |
Vector5Field * | addVector5 (const char *name) |
Creates a Vector5Field with name and adds it to the container. | |
Vector5Field * | addVector5 (const char *name, const Vector5 &value) |
Creates a Vector5Field with name and adds it to the container. | |
Vector6Field * | addVector6 (const char *name) |
Creates a Vector6Field with name and adds it to the container. | |
Vector6Field * | addVector6 (const char *name, const Vector6 &value) |
Creates a Vector6Field with name and adds it to the container. | |
Vector10Field * | addVector10 (const char *name) |
Creates a Vector10Field with name and adds it to the container. | |
Vector10Field * | addVector10 (const char *name, const Vector10 &value) |
Creates a Vector10Field with name and adds it to the container. | |
ImageVectorField * | addImageVector (const char *name) |
Creates a ImageVectorField with name and adds it to the container. | |
ImageVectorField * | addImageVector (const char *name, const ImageVector &value) |
Creates a ImageVectorField with name and adds it to the container. | |
ImageVectorField * | addImageVector (const char *name, MLint x, MLint y, MLint z, MLint c, MLint t, MLint u) |
Creates a ImageVectorField with name and adds it to the container. | |
SubImageBoxField * | addSubImageBox (const char *name) |
Creates a SubImageBoxField with name and adds it to the container. | |
SubImageBoxField * | addSubImageBox (const char *name, const SubImageBox &value) |
Creates a SubImageBoxField with name and adds it to the container. | |
SubImageBoxdField * | addSubImageBoxd (const char *name) |
Creates a SubImageBoxd field with name and adds it to the container. | |
SubImageBoxdField * | addSubImageBoxd (const char *name, const SubImageBoxd &value) |
Creates a SubImageBoxd field with name and adds it to the container. | |
ColorField * | addColor (const char *name) |
Creates a ColorField with name and adds it to the container. | |
ColorField * | addColor (const char *name, float r, float g, float b) |
Creates a ColorField with name and adds it to the container. | |
ColorField * | addColor (const char *name, const Vector3 &value) |
Creates a ColorField with name and adds it to the container. | |
PlaneField * | addPlane (const char *name) |
Creates a PlaneField with name and adds it to the container. | |
PlaneField * | addPlane (const char *name, double f0, double f1, double f2, double f3) |
Creates a PlaneField with name and adds it to the container. | |
PlaneField * | addPlane (const char *name, const Plane &value) |
Creates a PlaneField with name and adds it to the container. | |
RotationField * | addRotation (const char *name) |
Creates a RotationField with name and adds it to the container. | |
RotationField * | addRotation (const char *name, const Rotation &value) |
Creates a RotationField with name and adds it to the container. | |
Matrix2Field * | addMatrix2 (const char *name) |
Creates a Matrix2Field with name and adds it to the container. | |
Matrix2Field * | addMatrix2 (const char *name, const Matrix2 &value) |
Creates a Matrix2Field with name and adds it to the container. | |
Matrix3Field * | addMatrix3 (const char *name) |
Creates a Matrix3Field with name and adds it to the container. | |
Matrix3Field * | addMatrix3 (const char *name, const Matrix3 &value) |
Creates a Matrix3Field with name and adds it to the container. | |
Matrix4Field * | addMatrix4 (const char *name) |
Creates a Matrix4Field with name and adds it to the container. | |
Matrix4Field * | addMatrix4 (const char *name, const Matrix4 &value) |
Creates a Matrix4Field with name and adds it to the container. | |
Matrix5Field * | addMatrix5 (const char *name) |
Creates a Matrix5Field with name and adds it to the container. | |
Matrix5Field * | addMatrix5 (const char *name, const Matrix5 &value) |
Creates a Matrix5Field with name and adds it to the container. | |
Matrix6Field * | addMatrix6 (const char *name) |
Creates a Matrix6Field with name and adds it to the container. | |
Matrix6Field * | addMatrix6 (const char *name, const Matrix6 &value) |
Creates a Matrix6Field with name and adds it to the container. | |
MatrixField * | addMatrix (const char *name) |
Creates a MatrixField with name and adds it to the container. | |
MatrixField * | addMatrix (const char *name, const Matrix4 &value) |
Creates a MatrixField with name and adds it to the container. | |
MLDataTypeField * | addMLDataType (const char *name) |
Creates a MTDataTypeField with name and adds it to the container. | |
MLDataTypeField * | addMLDataType (const char *name, MLDataType value) |
Creates a MTDataTypeField with name and adds it to the container. | |
UniversalTypeField * | addUniversalType (const char *name) |
Creates an UniversalTypeField field with name and adds it to the container. | |
IntListField * | addIntList (const char *name) |
Creates an IntListField field with name and empty list value and adds it to the container. | |
IntListField * | addIntList (const char *name, const std::vector< MLint > &value) |
Creates an IntListField field with name and given list value and adds it to the container. | |
DoubleListField * | addDoubleList (const char *name) |
Creates an DoubleListField field with name and empty list value and adds it to the container. | |
DoubleListField * | addDoubleList (const char *name, const std::vector< double > &value) |
Creates an DoubleListField field with name and given list value and adds it to the container. | |
Vector2ListField * | addVector2List (const char *name) |
Creates an Vector2ListField field with name and empty list value and adds it to the container. | |
Vector2ListField * | addVector2List (const char *name, const std::vector< Vector2 > &value) |
Creates an Vector2ListField field with name and given list value and adds it to the container. | |
Vector3ListField * | addVector3List (const char *name) |
Creates an Vector3ListField field with name and empty list value and adds it to the container. | |
Vector3ListField * | addVector3List (const char *name, const std::vector< Vector3 > &value) |
Creates an Vector3ListField field with name and given list value and adds it to the container. | |
Vector4ListField * | addVector4List (const char *name) |
Creates an Vector4ListField field with name and empty list value and adds it to the container. | |
Vector4ListField * | addVector4List (const char *name, const std::vector< Vector4 > &value) |
Creates an Vector4ListField field with name and given list value and adds it to the container. | |
size_t | getNumFields () const |
Returns the number of added fields. | |
bool | hasField (const std::string &name) const |
Returns true if the field with name name exists; otherwise false is returned. | |
Field * | getField (const std::string &name) const |
Returns the pointer to the field with name name . | |
Field * | getField (MLint index) const |
Returns pointer of field at index if it exists. If not, -1 is returned. | |
MLint | getFieldIndex (Field *field) const |
Returns index of field if it exists. If not, -1 is returned. | |
void | setFieldStringValue (const std::string &name, const std::string &value) |
Sets the value of the field with name if it exists. | |
std::string | getFieldStringValue (const std::string &name) const |
Returns the string value of the field with name if it is found. | |
virtual void | deactivateAttachments () |
Disables notification handling, i.e., all fields of this module will not send notifications to attached sensors and fields any more if their values are set or changed. | |
Public Member Functions inherited from ml::Base | |
Base () | |
Constructor. | |
virtual | ~Base () |
Destructor. | |
virtual Base * | deepCopy () const |
Set addStateToTree version number that can be accessed via getAddStateVersion() | |
bool | isOfAllowedType (const std::vector< const RuntimeType * > &types) const |
Check if this object's type is equal to or derived from one of the types given in the argument. | |
virtual bool | isRefCountedBase () const |
Returns if the instance is derived from RefCountedBase. | |
virtual std::string | detailString () const |
Return a string describing this object. | |
virtual bool | implementsPersistence (PersistenceInterface) const |
Override this method to declare which persistence interfaces are implemented by your derived class. | |
virtual std::string | persistentState () const |
Returns a string describing the object's internal state. | |
virtual void | setPersistentState (const std::string &state) |
Restores the object's internal state from a string that had been previously generated using persistentState() . | |
virtual void | addStateToTree (TreeNode *) const |
Attaches the object state as children of the given parent node. | |
virtual void | readStateFromTree (TreeNode *) |
Reads the object state from the children of the given parent node. | |
virtual void | writeTo (AbstractPersistenceOutputStream *) const |
Write the objects state to the data stream object. | |
virtual void | readFrom (AbstractPersistenceInputStream *, int) |
Read the objects state from the data stream object. | |
Protected Types | |
enum | EStatusCode { SC_OK = 0 , SC_ERROR_INPUT_OBJECT , SC_ERROR_INPUT_PARAMETER , SC_ERROR_INTERNAL } |
Contains possible values of field statusCode . More... | |
Protected Types inherited from ml::Module | |
enum | THREAD_SUPPORT { NO_THREAD_SUPPORT = PagedImage::NO_THREAD_SUPPORT , MULTITHREADED = PagedImage::MULTITHREADED , IO_THREAD = PagedImage::IO_THREAD } |
Enumerator deciding whether and which type of multithreading is supported by this module. More... | |
Protected Member Functions | |
virtual void | validateInput ()=0 |
Validates the values of module's input fields (object and parameter fields). | |
virtual void | update ()=0 |
Executes the algorithm and updates the values of module's output fields with results. | |
virtual void | clear ()=0 |
Clears the values of module's output fields (object and parameter fields). | |
virtual void | setOutputImageProperties (int outputIndex, PagedImage *outputImage) |
Sets properties of the output image at output outputIndex . | |
Protected Member Functions inherited from ml::Module | |
void | handleNotificationInternal (Field *field, FieldSensor::Strength strength) override |
Called from FieldContainer whenever a field changes. | |
virtual void | provideCustomPage (int, const SubImageBox &, MLMemoryBlockHandle &) |
This method allows a Module to provide its own pages to the Host for the outputIndex output image. | |
void | handleNotificationOff () |
Decreases lock counter for handleNotification calls. | |
void | handleNotificationOn () |
Increases lock counter for handleNotification calls. | |
bool | isHandleNotificationOn () |
Returns true if handleNotification calls are permitted, otherwise false. | |
void | setOutputImageInplace (MLint outputIndex=0, MLint inputIndex=0) |
Set optimization flag: If calculating a page in calculateOutputSubImage(), the output image page of output outputIndex shall use the same memory as the input page of input inputIndex . | |
void | unsetOutputImageInplace (MLint outputIndex=0) |
Clear optimization flag: output page of output at outputIndex and input tile shall use different memory buffers in calculateOutputSubImage(). | |
void | setBypass (MLint outputIndex=0, MLint inputIndex=0) |
Sets the input image whose pages can also be used instead of output pages for the output image at outputIndex to avoid recalculations. | |
void | setClampPagesToImageExtent (bool flag=true) |
Enables/disables page clamping on all output images. | |
void | setThreadSupport (THREAD_SUPPORT supportMode) |
Pass any THREAD_SUPPORT supportMode to decide whether and what type of multithreading is supported by this module. | |
void | permitRecursiveHandleNotifications (bool enable) |
If this flag is set to enable =true, recursive entries in handleNotification are permitted. | |
void | setVoxelDataTypeSupport (PERMITTED_TYPES permTypes) |
Specifies which types this module supports. | |
virtual CalculateOutputImageHandler * | createCalculateOutputImageHandler (PagedImage *outputImage) |
Creates the CalculateOutputImageHandler for the given output image outputImage . | |
virtual SubImageBox | calculateInputSubImageBox (int, const SubImageBox &outputSubImageBox, int) |
Called by the Host to determine which input image region (tile) of input inputIndex is required to calculate a certain output image region (page) of output outputIndex . | |
virtual void | calculateOutputSubImage (SubImage *outputSubImage, int outputIndex, SubImage *inputSubImages) |
Calculate page outputSubImage of output image with index outputIndex given the input image tiles in array inputSubImages . | |
ML-Module base class to simplify development of modules encapsulating an algorithm with dedicated input and output interface.
The class AlgorithmModule already implements an update behavior and status feedback mechanism including a field interface. A developer of a derivative class has to declare module's input and output fields: The name of an input field has to start with prefix "in" followed by an uppercase letter. The name of an output field has to start with prefix "out" followed by an uppercase letter. Beside this the developer has to overwrite interface methods of base class:
Definition at line 30 of file mlAlgorithmModule.h.
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protected |
Contains possible values of field statusCode
.
Definition at line 74 of file mlAlgorithmModule.h.
Forwards given parameters to base class constructor.
Creates fields of update control and status feedback interface.
numInputImages | Number of input images. |
numOutputImages | Number of output images. |
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override |
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overridevirtual |
Never overwrite this method in derivative!
Updates the internal module state after loading or cloning the module, and enables notification handling again. Related to current value of field onInputChangeBehavior
an update or clear is initiated.
Reimplemented from ml::FieldContainer.
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overridevirtual |
Never overwrite this method in derivative!
Makes sure to call derivative's implementation of setOutputImageProperties() only if update succeeded. Otherwise the output image is invalidated. Handles occurring AlgorithmModule::Error or invalidated output image as result of setOutputImageProperties() and sets status fields accordingly.
outputIndex | Index of affected output image field. |
outputImage | Affected output image. |
Reimplemented from ml::Module.
Clears the values of module's output fields (object and parameter fields).
Implemented in ml::DicomModifyTree, ml::AlgorithmModuleExample, and ml::AlgorithmModuleExampleWithOutputImage.
Never overwrite this method in derivative!
Handles field changes. When affected field
is identified as an input field than update or clear of module's output fields related to current value of field onInputChangeBehavior
is initiated. Interface fields are also considered:
field | Affected field whose value was changed. |
Reimplemented from ml::Module.
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protectedvirtual |
Sets properties of the output image at output outputIndex
.
outputIndex | Index of affected output image field. |
outputImage | Affected output image. |
Throws | an exception of type AlgorithmModule::Error on failure. |
Reimplemented in ml::AlgorithmModuleExampleWithOutputImage.
Executes the algorithm and updates the values of module's output fields with results.
Throws | an exception of type AlgorithmModule::Error on failure. |
Implemented in ml::DicomModifyTree, ml::AlgorithmModuleExample, and ml::AlgorithmModuleExampleWithOutputImage.
Validates the values of module's input fields (object and parameter fields).
Throws | an exception of type AlgorithmModule::Error on failure. |
Implemented in ml::DicomModifyTree, ml::AlgorithmModuleExample, and ml::AlgorithmModuleExampleWithOutputImage.