The KernelLineApplicator class takes a Kernel instance and filters one line of an mlSubImage and writes it to an output also given by another mlSubImage. More...

#include <mlKernelLineApplicator.h>

Inheritance diagram for ml::KernelLineApplicator< DATATYPE, KDATATYPE >:

Public Types
enum	ApplyMode { APPLY_COPY = 0 , APPLY_NORMALLY , APPLY_USER_FILTER , APPLY_IMAGE_INTERVAL_FILTER , APPLY_KERNEL_INTERVAL_FILTER , APPLY_IMAGE_AND_KERNEL_INTERVAL_FILTER , NUM_APPLY_MODES }
	The ApplyModes decide about the way how the kernel is used to filter the input image and which parts of it. More...

Public Member Functions
	KernelLineApplicator ()
	Default constructor. More...

	KernelLineApplicator (const KernelLineApplicator &kernLineApp)
	Copy constructor. More...

	KernelLineApplicator (const TKernel< KDATATYPE > &kernel, ApplyMode applyMode, MLdouble iIntMin=-DBL_MIN, MLdouble iIntMax=DBL_MAX, MLdouble kIntMin=-DBL_MIN, MLdouble kIntMax=DBL_MAX)
	Convenience constructor to create a complete line applicator with all important parameters set. More...

virtual	~KernelLineApplicator ()
	Destructor. Frees dynamic members. More...

const KernelLineApplicator &	operator= (const KernelLineApplicator &kernLineApp)
	Assignment operator. Assures that dynamic and normal members are copied correctly. More...

void	setImageInterval (MLdouble min=-DBL_MAX, MLdouble max=DBL_MAX)
	Correlations can be applied to a subset of voxels by setting a threshold interval which includes the convoluted voxels. More...

void	setKernelInterval (MLdouble min=-DBL_MAX, MLdouble max=DBL_MAX)
	When filtering an image then voxels covered by the kernel elements outside a certain grey level interval can be excluded. More...

bool	isInImageInterval (DATATYPE v) const
	Test whether the value v is within image interval. More...

bool	isInKernelInterval (DATATYPE v) const
	Test whether the value v is within kernel interval. More...

void	applyToLine (TSubImageWithCursor< DATATYPE > inSubImg, TSubImageWithCursor< DATATYPE > outSubImg, size_t numVox)
	Selects the correct line filter mode and filters a row with the currently specified kernel. More...

virtual void	applyUserFilterToLine (TSubImageWithCursor< DATATYPE > inSubImg, TSubImageWithCursor< DATATYPE > outSubImg, long numVox) const
	Filter a row with the current kernel with a user defined algorithm. More...

Set/Get the mode how the kernel is applied to the image.
void	setApplyMode (ApplyMode mode)

ApplyMode	getApplyMode () const

Return the interval limits for image and kernel interval.
DATATYPE	getImageIntervalMin () const

DATATYPE	getImageIntervalMax () const

DATATYPE	getKernelIntervalMin () const

DATATYPE	getKernelIntervalMax () const

Public Member Functions inherited from ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >
	KernelLineApplicatorBase ()
	Default constructor. More...

	KernelLineApplicatorBase (const KernelLineApplicatorBase< DATATYPE, KDATATYPE > &kernLineAppBase)
	Copy constructor. More...

	KernelLineApplicatorBase (const TKernel< KDATATYPE > &kernel)
	Convenience constructor to create a complete line applicator with all important parameters set. More...

	~KernelLineApplicatorBase () override
	Destructor. Frees dynamic members. More...

const KernelLineApplicatorBase< DATATYPE, KDATATYPE > &	operator= (const KernelLineApplicatorBase< DATATYPE, KDATATYPE > &kernLineAppBase)
	Assignment operator. Assures that dynamic and normal members are copied correctly. More...

void	applyToLine (TSubImageWithCursor< DATATYPE > inSubImg, TSubImageWithCursor< DATATYPE > , size_t) override
	Applies the kernel to a row of the input subimage. More...

ImageVector	getNegativeExtent () const override
	Returns the negative extent of a kernel used for filtering. More...

ImageVector	getPositiveExtent () const override
	Returns the positive extent of a kernel used for filtering. More...

void	setKernel (const TKernel< KDATATYPE > &kernel)

const TKernel< KDATATYPE > &	getKernel () const

Public Member Functions inherited from ml::LineApplicator< DATATYPE >
virtual	~LineApplicator ()
	Virtual destructor. Currently it does nothing. More...

Static Public Attributes
static const char *const	ApplyModeNames []
	Strings for ApplyMode names. See mlKernalLineApplicator.cpp for the names. More...

Protected Member Functions
void	_init ()
	Initialization the current instance of mlKernelApplicator. To be called by constructors. More...

Protected Member Functions inherited from ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >
void	_init ()
	Initialization the current instance of mlKernelApplicatorBase. To be called by constructors. More...

virtual void	_defineIndices (const SubImage &inSubImg)
	Create the table of offsets from the voxel (0,0,0,0,0,0) of the kernel to any other voxel of the kernel in an inSubImg. More...

virtual void	_clearIndices ()
	Removes the current _indexTab. More...

Protected Attributes
ApplyMode	_applyMode
	The mode how the kernel is applied to the image. More...

bool	_normOrigI
	_normOrigI==true indicates that the interval is used exclusively. More...

bool	_normKernI
	_normKernI==true indicates that the interval is used exclusively. More...

Minimum/Maximum limits of interval limiting the input image voxels to be filtered.
MLdouble	_origIMin

MLdouble	_origIMax

DATATYPE	_origIMinDT

DATATYPE	_origIMaxDT

Minimum/Maximum limits of interval limiting the input image voxels used for filtering.
MLdouble	_kernIMin

MLdouble	_kernIMax

DATATYPE	_kernIMinDT

DATATYPE	_kernIMaxDT

Protected Attributes inherited from ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >
const TKernel< KDATATYPE > *	_kernel
	Pointer to the kernel used to filter an input page. More...

MLsoffset *	_indexTab
	Table and variables defined temporarily while filtering a page. More...

size_t	_indexTabSize
	Size of _indexTab. Default is 0. More...

MLsoffset	_srcVoxOffset
	Offset from origin of kernel in input image to the voxel under the replaced voxel in output image. More...

Detailed Description

template<typename DATATYPE, typename KDATATYPE>
class ml::KernelLineApplicator< DATATYPE, KDATATYPE >

The KernelLineApplicator class takes a Kernel instance and filters one line of an mlSubImage and writes it to an output also given by another mlSubImage.

This class is derived from the KernelLineApplicatorBase where it needs to overload the central method

applyToLine(TSubImageWithCursor<DATATYPE> *inSubImg, TSubImageWithCursor<DATATYPE> *outSubImg, size_t numVox)

which applies the currently set kernel to a line of numVox voxels in the inSubImg and writes the result to outSubImg. Before doing that in both subimages the cursor position must be set adequately. This is usually done by applyFiltering functions from the KernelTools class. So usually there is no need to use this class explicitly if it's not overloaded.

There are some modes how the kernel can be applied to inSubImg and the user can implement its own mode by overloading the method

applyUserFilterToLine(TSubImageWithCursor<DATATYPE> *inSubImg, TSubImageWithCursor<DATATYPE> *outSubImg, int numVox)

Then pass an instance of your KernelLineApplicator to an applyFiltering functions from the KernelTools class which filters an entire subimage with it.

For related code and more information see mlKernelExample.h, mlKernel.h, mlKernelBaseModule.h, mlKernelModule.h, mlKernelEditor.h, mlRankFilter.h, mlExtConvolutionFilter.h, mlKernelMacros, mlKernelTools.h and mlConvolutionFilter.h.

Definition at line 67 of file mlKernelLineApplicator.h.

Member Enumeration Documentation

◆ ApplyMode

template<typename DATATYPE , typename KDATATYPE >

enum ml::KernelLineApplicator::ApplyMode

The ApplyModes decide about the way how the kernel is used to filter the input image and which parts of it.

-APPLY_COPY Copy those row voxels from input subimage which correspond to the row to be modified in the output image.

-APPLY_NORMALLY Filter a row with the current kernel.

-APPLY_USER_FILTER Filter a row with the current kernel with a user defined algorithm.

-APPLY_IMAGE_INTERVAL_FILTER Filter a row with the current kernel. Apply kernel only to voxels which fulfil the image interval.

-APPLY_KERNEL_INTERVAL_FILTER Filter a voxel with the current kernel. All input image voxels under kernel elements which are not in the kernel interval are not multiplied with kernel element values and are not added to result value.

-APPLY_IMAGE_AND_KERNEL_INTERVAL_FILTER Filter a voxel with the current kernel. All input image voxels under kernel elements which are not in the kernel interval are not multiplied with kernel element values and are not added to result value. Only input image voxels are filtered which fulfil the image interval.

Enumerator
APPLY_COPY
APPLY_NORMALLY
APPLY_USER_FILTER
APPLY_IMAGE_INTERVAL_FILTER
APPLY_KERNEL_INTERVAL_FILTER
APPLY_IMAGE_AND_KERNEL_INTERVAL_FILTER
NUM_APPLY_MODES

Definition at line 101 of file mlKernelLineApplicator.h.

Constructor & Destructor Documentation

◆ KernelLineApplicator() [1/3]

template<typename DATATYPE , typename KDATATYPE >

ml::KernelLineApplicator< DATATYPE, KDATATYPE >::KernelLineApplicator ( )

inline

Default constructor.

Default settings are an invalid kernel, empty index tables, unlimited image and filter intervals and _srcVoxOffset=0. _applyMode is ApplyNormally.

Definition at line 121 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_init().

◆ KernelLineApplicator() [2/3]

template<typename DATATYPE , typename KDATATYPE >

ml::KernelLineApplicator< DATATYPE, KDATATYPE >::KernelLineApplicator ( const KernelLineApplicator< DATATYPE, KDATATYPE > & kernLineApp )

inline

Copy constructor.

Definition at line 129 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_init().

◆ KernelLineApplicator() [3/3]

template<typename DATATYPE , typename KDATATYPE >

ml::KernelLineApplicator< DATATYPE, KDATATYPE >::KernelLineApplicator	(	const TKernel< KDATATYPE > &	kernel,
		ApplyMode	applyMode,
		MLdouble	iIntMin = `-DBL_MIN`,
		MLdouble	iIntMax = `DBL_MAX`,
		MLdouble	kIntMin = `-DBL_MIN`,
		MLdouble	kIntMax = `DBL_MAX`
	)

inline

Convenience constructor to create a complete line applicator with all important parameters set.

An instance of an mlKernelApplicator and the kernel application mode must be passed. Image and kernel interval are optional and default to unlimited intervals.

Definition at line 142 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_init(), and ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::setKernel().

◆ ~KernelLineApplicator()

template<typename DATATYPE , typename KDATATYPE >

virtual ml::KernelLineApplicator< DATATYPE, KDATATYPE >::~KernelLineApplicator ( )

inlinevirtual

Destructor. Frees dynamic members.

Definition at line 165 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_clearIndices().

Member Function Documentation

◆ _init()

template<typename DATATYPE , typename KDATATYPE >

void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_init ( )

inlineprotected

Initialization the current instance of mlKernelApplicator. To be called by constructors.

Definition at line 398 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_init().

◆ applyToLine()

template<typename DATATYPE , typename KDATATYPE >

void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::applyToLine	(	TSubImageWithCursor< DATATYPE > *	inSubImg,
		TSubImageWithCursor< DATATYPE > *	outSubImg,
		size_t	numVox
	)

inlinevirtual

Selects the correct line filter mode and filters a row with the currently specified kernel.

Cursors must have been set in input and output subimage. Define the index table before using this method. On empty index tables the voxel of the input image is copied to the output.

Reimplemented from ml::LineApplicator< DATATYPE >.

Definition at line 299 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::_defineIndices(), ml::KernelTools::copyLine(), ml::KernelTools::correlateLine(), ml::KernelTools::correlateLineWithImageAndKernelInterval(), ml::KernelTools::correlateLineWithImageInterval(), ml::KernelTools::correlateLineWithKernelInterval(), and ml::TSubImageWithCursor< DATATYPE >::getCursorPos().

◆ applyUserFilterToLine()

template<typename DATATYPE , typename KDATATYPE >

virtual void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::applyUserFilterToLine	(	TSubImageWithCursor< DATATYPE > *	inSubImg,
		TSubImageWithCursor< DATATYPE > *	outSubImg,
		long	numVox
	)		const

inlinevirtual

Filter a row with the current kernel with a user defined algorithm.

Cursors in input and output subimage and index table must be up to date. Overload this method to implement you own algorithm to apply the kernel to the image.

Definition at line 382 of file mlKernelLineApplicator.h.

References ml::KernelTools::copyLine(), and ml::TSubImageWithCursor< DATATYPE >::getCursorPos().

◆ getApplyMode()

template<typename DATATYPE , typename KDATATYPE >

ApplyMode ml::KernelLineApplicator< DATATYPE, KDATATYPE >::getApplyMode ( ) const

inline

Definition at line 199 of file mlKernelLineApplicator.h.

◆ getImageIntervalMax()

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::getImageIntervalMax ( ) const

inline

Definition at line 208 of file mlKernelLineApplicator.h.

◆ getImageIntervalMin()

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::getImageIntervalMin ( ) const

inline

Definition at line 207 of file mlKernelLineApplicator.h.

◆ getKernelIntervalMax()

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::getKernelIntervalMax ( ) const

inline

Definition at line 210 of file mlKernelLineApplicator.h.

◆ getKernelIntervalMin()

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::getKernelIntervalMin ( ) const

inline

Definition at line 209 of file mlKernelLineApplicator.h.

◆ isInImageInterval()

template<typename DATATYPE , typename KDATATYPE >

bool ml::KernelLineApplicator< DATATYPE, KDATATYPE >::isInImageInterval ( DATATYPE v ) const

inline

Test whether the value v is within image interval.

Note that the interval is considered exclusively if maximum is smaller than minimum, i.e. all values between maximum and minimum are excluded and all others are included. Default is false.

Definition at line 252 of file mlKernelLineApplicator.h.

◆ isInKernelInterval()

template<typename DATATYPE , typename KDATATYPE >

bool ml::KernelLineApplicator< DATATYPE, KDATATYPE >::isInKernelInterval ( DATATYPE v ) const

inline

Test whether the value v is within kernel interval.

Note that the interval is considered exclusively if maximum is smaller than minimum, i.e. all values between maximum and minimum are excluded and all other are included. Default is false.

Definition at line 277 of file mlKernelLineApplicator.h.

◆ operator=()

template<typename DATATYPE , typename KDATATYPE >

const KernelLineApplicator& ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator= ( const KernelLineApplicator< DATATYPE, KDATATYPE > & kernLineApp )

inline

Assignment operator. Assures that dynamic and normal members are copied correctly.

Definition at line 173 of file mlKernelLineApplicator.h.

References ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_applyMode, ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMax, ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMin, ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMax, ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMin, and ml::KernelLineApplicatorBase< DATATYPE, KDATATYPE >::operator=().

◆ setApplyMode()

template<typename DATATYPE , typename KDATATYPE >

void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::setApplyMode ( ApplyMode mode )

inline

Definition at line 198 of file mlKernelLineApplicator.h.

◆ setImageInterval()

template<typename DATATYPE , typename KDATATYPE >

void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::setImageInterval	(	MLdouble	min = `-DBL_MAX`,
		MLdouble	max = `DBL_MAX`
	)

inline

Correlations can be applied to a subset of voxels by setting a threshold interval which includes the convoluted voxels.

If used then only voxels >= min and <=max are modified by correlations. Default is (-DBL_MAX, DBL_MAX).

Definition at line 219 of file mlKernelLineApplicator.h.

◆ setKernelInterval()

template<typename DATATYPE , typename KDATATYPE >

void ml::KernelLineApplicator< DATATYPE, KDATATYPE >::setKernelInterval	(	MLdouble	min = `-DBL_MAX`,
		MLdouble	max = `DBL_MAX`
	)

inline

When filtering an image then voxels covered by the kernel elements outside a certain grey level interval can be excluded.

If used then only voxels >= min and <=max are multiplied with kernel values. Otherwise these products are not added to the resulting output image voxel. Default is (-DBL_MAX, DBL_MAX).

Definition at line 236 of file mlKernelLineApplicator.h.

Member Data Documentation

◆ _applyMode

template<typename DATATYPE , typename KDATATYPE >

ApplyMode ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_applyMode

protected

The mode how the kernel is applied to the image.

Definition at line 420 of file mlKernelLineApplicator.h.

Referenced by ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator=().

◆ _kernIMax

template<typename DATATYPE , typename KDATATYPE >

MLdouble ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMax

protected

Definition at line 441 of file mlKernelLineApplicator.h.

Referenced by ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator=().

◆ _kernIMaxDT

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMaxDT

protected

Definition at line 443 of file mlKernelLineApplicator.h.

◆ _kernIMin

template<typename DATATYPE , typename KDATATYPE >

MLdouble ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMin

protected

Definition at line 440 of file mlKernelLineApplicator.h.

Referenced by ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator=().

◆ _kernIMinDT

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_kernIMinDT

protected

Definition at line 442 of file mlKernelLineApplicator.h.

◆ _normKernI

template<typename DATATYPE , typename KDATATYPE >

bool ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_normKernI

protected

_normKernI==true indicates that the interval is used exclusively.

Definition at line 447 of file mlKernelLineApplicator.h.

◆ _normOrigI

template<typename DATATYPE , typename KDATATYPE >

bool ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_normOrigI

protected

_normOrigI==true indicates that the interval is used exclusively.

Definition at line 434 of file mlKernelLineApplicator.h.

◆ _origIMax

template<typename DATATYPE , typename KDATATYPE >

MLdouble ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMax

protected

Definition at line 428 of file mlKernelLineApplicator.h.

Referenced by ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator=().

◆ _origIMaxDT

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMaxDT

protected

Definition at line 430 of file mlKernelLineApplicator.h.

◆ _origIMin

template<typename DATATYPE , typename KDATATYPE >

MLdouble ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMin

protected

Definition at line 427 of file mlKernelLineApplicator.h.

Referenced by ml::KernelLineApplicator< DATATYPE, KDATATYPE >::operator=().

◆ _origIMinDT

template<typename DATATYPE , typename KDATATYPE >

DATATYPE ml::KernelLineApplicator< DATATYPE, KDATATYPE >::_origIMinDT

protected

Definition at line 429 of file mlKernelLineApplicator.h.

◆ ApplyModeNames

template<typename DATATYPE , typename KDATATYPE >

const char *const ml::KernelLineApplicator< DATATYPE, KDATATYPE >::ApplyModeNames

static

Initial value:

= {
    "ApplyCopy",
    "ApplyNormally",
    "ApplyUserFilter",
    "ApplyImageIntervalFilter",
    "ApplyKernelIntervalFilter",
    "ApplyImageAndKernelInterval"
  }

Strings for ApplyMode names. See mlKernalLineApplicator.cpp for the names.

Strings for mlApplyModeNames.

Definition at line 115 of file mlKernelLineApplicator.h.

The documentation for this class was generated from the following file:

MeVisLab/Standard/Sources/ML/MLKernel/mlKernelLineApplicator.h

Public Types

Public Member Functions

Static Public Attributes

Protected Member Functions

Protected Attributes

Detailed Description

template<typename DATATYPE, typename KDATATYPE> class ml::KernelLineApplicator< DATATYPE, KDATATYPE >

Member Enumeration Documentation

◆ ApplyMode

Constructor & Destructor Documentation

◆ KernelLineApplicator() [1/3]

◆ KernelLineApplicator() [2/3]

◆ KernelLineApplicator() [3/3]

◆ ~KernelLineApplicator()

Member Function Documentation

◆ _init()

◆ applyToLine()

◆ applyUserFilterToLine()

◆ getApplyMode()

◆ getImageIntervalMax()

◆ getImageIntervalMin()

◆ getKernelIntervalMax()

◆ getKernelIntervalMin()

◆ isInImageInterval()

◆ isInKernelInterval()

◆ operator=()

◆ setApplyMode()

◆ setImageInterval()

◆ setKernelInterval()

Member Data Documentation

◆ _applyMode

◆ _kernIMax

◆ _kernIMaxDT

◆ _kernIMin

◆ _kernIMinDT

◆ _normKernI

◆ _normOrigI

◆ _origIMax

◆ _origIMaxDT

◆ _origIMin

◆ _origIMinDT

◆ ApplyModeNames

template<typename DATATYPE, typename KDATATYPE>
class ml::KernelLineApplicator< DATATYPE, KDATATYPE >