VesselEdge Class Reference

Class VesselEdge. More...

#include <mlVesselEdge.h>

Inheritance diagram for VesselEdge:

Public Member Functions
	VesselEdge (const VesselEdge &other)
	Copy constructor (creates an unconnected object, only copies properties), deprecated.
	~VesselEdge () override
	Destructor.
void	copyProperties (const VesselEdge *other)
	Copy all properties (topology information is left unchanged)
bool	operator== (const VesselEdge &other) const
bool	operator!= (const VesselEdge &other) const
void	setSTLabel (Graph *pGraph)
	Set label of edge and the attached subtree defined by edge directions according to labels of pGraph.
bool	markST (int a_label, float r, float g, float b, float a, Vector3 pos, int snap)
	Set label and rgb color of edge and the attached subtree defined by edge directions.
bool	markEdge (int a_label, float r, float g, float b, float a, Vector3 pos, int snap)
Graph topology
Get the predecessor node of this edge.
VesselNode *	predNode ()
const VesselNode *	predNode () const
VesselNode *	succNode ()
	Get the successor node of this edge.
const VesselNode *	succNode () const
void	setPred (VesselNode *node)
	Connect edge-head to node node.
void	setSucc (VesselNode *node)
	Connect edge-tail to node node.
bool	isPred (const VesselNode *node) const
	Is the graphNode the preceding node of the edge?
bool	isSucc (const VesselNode *node) const
	Is the graphNode the succeeding node of the edge?
void	switchDirection ()
	Change direction of the edge by exchanging pred. and succ. node.
void	setCycle ()
	Separate circles in the graph or connections between trees.
void	unsetCycle ()
bool	isCycle () const
Graph geometry
Get the euclidean distance between the edge and vp. Here: get the distance to the nearest skeleton voxel.
double	distance (Vector3 vp) const
std::pair< MLdouble, size_t >	getDistanceAndNearestSkeletonIndex (const Vector3 &pos) const
Vector3	extent () const
	Get the edge's extent.
SubImageBoxd	getBoundingBox () const
	Bounding box of the edge.
void	transform (const Matrix4 &m)
	Apply a 4x4 homogeneous transformation matrix to all skeleton positions.
void	convertToVoxel (Matrix4 *mat)
	Convert all skeleton coordinates.
void	convertToWorld (Matrix4 *mat)
Skeletons
Skeleton *	createSkeleton (const Vector3 &pos=Vector3(0), double minDistance=0.0, double maxDistance=0.0)
Skeleton *	createSkeleton (const ImageVector &pos, double minDistance=0.0, double maxDistance=0.0)
Skeleton *	createSkeleton (const Skeleton *skeletonTemplate)
void	removeLeadingSkeletons (size_t count)
void	removeTrailingSkeletons (size_t count)
void	removeSkeleton (size_t index)
size_t	numSkeletons (void) const
Skeleton *	skeleton (size_t index)
const Skeleton *	skeleton (size_t index) const
void	skeletonsAscending (std::vector< Skeleton * > &skeletons)
	Return copy of skeletons' addresses in ascending order (graph hierarchy)
void	skeletonsAscending (std::vector< const Skeleton * > &skeletons) const
	Return copy of skeletons' addresses in ascending order (graph hierarchy)
void	skeletonsDescending (std::vector< Skeleton * > &skeletons)
	Return copy of skeletons' addresses in descending order (graph hierarchy)
void	skeletonsDescending (std::vector< const Skeleton * > &skeletons) const
	Return copy of skeletons' addresses in descending order (graph hierarchy)
void	orderSkeletonsAscending ()
void	skeletonsAscending (std::vector< Skeleton > &skeletons) const
	Return copy of skeletons in ascending order (graph hierarchy from pred -> succ)
void	skeletonsDescending (std::vector< Skeleton > &skeletons) const
	Return copy of skeletons in descending order (graph hierarchy from succ -> pred)
bool	skeletonsAreAscending () const
	Returns if the skeletons are ordered ascending.
void	clearSkeletons ()
	Encapsulate std::vector access.
Skeleton *	frontSkeleton ()
Skeleton *	backSkeleton ()
const Skeleton *	frontSkeleton () const
const Skeleton *	backSkeleton () const
Skeleton *	skeleton (Vector3 pos, int itemType)
	Get the skeleton with minimal distance to pos.
const Skeleton *	skeleton (Vector3 pos, int itemType) const
	Get the skeleton with minimal distance to pos.
size_t	getVoxelNum () const
	Get number of edge voxels.
void	smooth (unsigned int numSmoothingPasses, double positionSmoothingFactor, double radiusSmoothingFactor, double smoothingLimit=0.0f)
	Smooths the skeletons' positions and radii.
Persistence
Attaches the object state as children of the given parent node.
void	addStateToTree (TreeNode *parent) const override
	ML_SET_ADDSTATE_VERSION (3)
	Set current addStateToTree() version number:
void	readStateFromTree (TreeNode *parent) override
	Reads the object state from the children of the given parent node.
Public Member Functions inherited from BaseGraphItem
MLint	getRootId () const
	Get root id.
void	setRootId (MLint rootId)
	Sets the root id. Usually called by calling setRootIdToAllChildren on the graph itself.
Graph *	getGraph (void)
const Graph *	getGraph (void) const
MLint	getId (void) const
	Get unique id of the object.
Public Member Functions inherited from PropertyContainer
	PropertyContainer (const ManagerPointer &manager)
	PropertyContainer (const PropertyContainer &other)
	~PropertyContainer () override
bool	operator== (const PropertyContainer &other) const
	Check for equality (managers and values).
bool	operator!= (const PropertyContainer &other) const
	Check for inequality (managers and values).
void	copyProperties (const PropertyContainer &other)
	Copy all properties from the given container to this object.
const PropertyManager *	getPropertyManager () const
	Get read-only access to the associated property manager.
PropertyManager *	getPropertyManager ()
	Get access to the associated property manager.
PropertyMap	getPropertyMap () const
	Get a map of the contained properties, can be useful for comparison.
size_t	numberOfProperties () const
	Return the number of properties currently available.
const PropertyValue &	property (size_t index) const
	Get the property with index index as PropertyValue.
template<typename T >
T &	property (size_t index)
	Get the property with index index with type T. Throws boost::bad_get exception if the currently stored property has a different type.
template<typename T >
const T &	property (size_t index) const
	Get the property with index index with type T, const version. Throws boost::bad_get exception if the currently stored property has a different type.
const PropertyValue &	property (const std::string &name) const
	Get the property with name name.
template<typename T >
T &	property (const std::string &name)
template<typename T >
const T &	property (const std::string &name) const
virtual void	reset ()
	Set all properties to default values.
	ML_ABSTRACT_CLASS_HEADER (PropertyContainer)
void	addStateToTree (TreeNode *parent) const override
	ML_SET_ADDSTATE_VERSION (1)
	Set current addStateToTree() version number:
void	readStateFromTree (TreeNode *parent) override
	Reads the object state from the children of the given parent node.

Friends
class	EdgeAnalyser
class	Graph
class	LoadTreeData

Default Measurements
typedef double(VesselEdge::*	EdgeGetFkt) (void) const
	object bound function pointer: position of function relative to (individual) object base
typedef void(VesselEdge::*	EdgeSetFkt) (double)
	function to set double parameter value
	STATIC_GRAPH_PROPERTY (MLdouble, averageMinDistance, AverageMinDistance)
	STATIC_GRAPH_PROPERTY (MLdouble, length, Length)
	STATIC_GRAPH_PROPERTY (MLdouble, STLength, STLength)
	STATIC_GRAPH_PROPERTY (MLdouble, volume, Volume)
	STATIC_GRAPH_PROPERTY (MLdouble, STVolume, STVolume)
	STATIC_GRAPH_PROPERTY (Vector3, STBarycenter, STBarycenter)
	STATIC_GRAPH_PROPERTY (MLint, hierarchy, Hierarchy)
	STATIC_GRAPH_PROPERTY (MLint, label, Label)
	STATIC_GRAPH_PROPERTY (MLdouble, weight, Weight)
void	setSTLabel (int nLabel)
	Set label of edge and the attached subtree defined by edge directions.

Additional Inherited Members
Public Types inherited from PropertyContainer
typedef PropertyManager::Pointer	ManagerPointer
typedef PropertyManager::ConstPointer	ConstManagerPointer
typedef PropertyManager::PropertyMap	PropertyMap
Protected Member Functions inherited from BaseGraphItem
	BaseGraphItem (Graph &graph, MLint id, const ManagerPointer &manager)
	Constructor.
	BaseGraphItem (const BaseGraphItem &item)
	Copy constructor (creates an unconnected object, only copies properties), deprecated.
BaseGraphItem &	operator= (const BaseGraphItem &item)
	Assignment operator, deprecated. Use copyProperties() instead.
void	copyProperties (const BaseGraphItem *other)
	Copy all properties (topology information is left unchanged)
bool	operator== (const BaseGraphItem &other) const
	Compare properties (ignores topology information)
bool	operator!= (const BaseGraphItem &other) const
void	addStateToTree (TreeNode *parent) const override
	ML_SET_ADDSTATE_VERSION (2)
	Set current addStateToTree() version number:
void	readStateFromTree (TreeNode *parent) override
	Reads the object state from the children of the given parent node.
Protected Attributes inherited from BaseGraphItem
Graph *	_graph
	Reference to the owner Graph object.
Protected Attributes inherited from PropertyContainer
std::vector< PropertyValue >	_values
ManagerPointer	_manager

Detailed Description

Class VesselEdge.

Definition at line 34 of file mlVesselEdge.h.

Member Typedef Documentation

EdgeGetFkt

typedef double(VesselEdge::* VesselEdge::EdgeGetFkt) (void) const

object bound function pointer: position of function relative to (individual) object base

function to get double parameter value

Definition at line 117 of file mlVesselEdge.h.

EdgeSetFkt

typedef void(VesselEdge::* VesselEdge::EdgeSetFkt) (double)

function to set double parameter value

Definition at line 118 of file mlVesselEdge.h.

Constructor & Destructor Documentation

VesselEdge()

VesselEdge::VesselEdge

(

const VesselEdge &

other

)

Copy constructor (creates an unconnected object, only copies properties), deprecated.

~VesselEdge()

VesselEdge::~VesselEdge ( )

override

Destructor.

Member Function Documentation

addStateToTree()

void VesselEdge::addStateToTree ( TreeNode * parent ) const

override

backSkeleton() [1/2]

Skeleton * VesselEdge::backSkeleton ( )

inline

Definition at line 173 of file mlVesselEdge.h.

backSkeleton() [2/2]

const Skeleton * VesselEdge::backSkeleton ( ) const

inline

Definition at line 175 of file mlVesselEdge.h.

clearSkeletons()

void VesselEdge::clearSkeletons

(

)

Encapsulate std::vector access.

convertToVoxel()

void VesselEdge::convertToVoxel

(

Matrix4 *

mat

)

Convert all skeleton coordinates.

convertToWorld()

void VesselEdge::convertToWorld

(

Matrix4 *

mat

)

copyProperties()

void VesselEdge::copyProperties

(

const VesselEdge *

other

)

Copy all properties (topology information is left unchanged)

createSkeleton() [1/3]

Skeleton * VesselEdge::createSkeleton ( const ImageVector & pos, double minDistance = 0.0, double maxDistance = 0.0 )

inline

Definition at line 129 of file mlVesselEdge.h.

References mlrange_cast().

createSkeleton() [2/3]

Skeleton * VesselEdge::createSkeleton

(

const Skeleton *

skeletonTemplate

)

createSkeleton() [3/3]

Skeleton * VesselEdge::createSkeleton	(	const Vector3 &	pos = Vector3(0),
		double	minDistance = 0.0,
		double	maxDistance = 0.0 )

distance()

double VesselEdge::distance ( Vector3 vp ) const

inline

Definition at line 86 of file mlVesselEdge.h.

References mlrange_cast().

extent()

Vector3 VesselEdge::extent

(

)

const

Get the edge's extent.

frontSkeleton() [1/2]

Skeleton * VesselEdge::frontSkeleton ( )

inline

Definition at line 172 of file mlVesselEdge.h.

frontSkeleton() [2/2]

const Skeleton * VesselEdge::frontSkeleton ( ) const

inline

Definition at line 174 of file mlVesselEdge.h.

getBoundingBox()

SubImageBoxd VesselEdge::getBoundingBox

(

)

const

Bounding box of the edge.

getDistanceAndNearestSkeletonIndex()

std::pair< MLdouble, size_t > VesselEdge::getDistanceAndNearestSkeletonIndex

(

const Vector3 &

pos

)

const

getVoxelNum()

size_t VesselEdge::getVoxelNum

(

)

const

Get number of edge voxels.

isCycle()

bool VesselEdge::isCycle ( ) const

inline

Definition at line 79 of file mlVesselEdge.h.

isPred()

bool VesselEdge::isPred ( const VesselNode * node ) const

inline

Is the graphNode the preceding node of the edge?

Definition at line 69 of file mlVesselEdge.h.

isSucc()

bool VesselEdge::isSucc ( const VesselNode * node ) const

inline

Is the graphNode the succeeding node of the edge?

Definition at line 71 of file mlVesselEdge.h.

markEdge()

bool VesselEdge::markEdge	(	int	a_label,
		float	r,
		float	g,
		float	b,
		float	a,
		Vector3	pos,
		int	snap )

markST()

bool VesselEdge::markST	(	int	a_label,
		float	r,
		float	g,
		float	b,
		float	a,
		Vector3	pos,
		int	snap )

Set label and rgb color of edge and the attached subtree defined by edge directions.

Start at skeleton of this edge which is nearest to pos, while for snap = Graph::Node/Graph:Edge the nearest node skeleton or the nearest edge skeleton is used, respectively.

ML_SET_ADDSTATE_VERSION()

VesselEdge::ML_SET_ADDSTATE_VERSION

(

3

)

Set current addStateToTree() version number:

numSkeletons()

size_t VesselEdge::numSkeletons ( void ) const

inline

Definition at line 143 of file mlVesselEdge.h.

operator!=()

bool VesselEdge::operator!= ( const VesselEdge & other ) const

inline

Definition at line 50 of file mlVesselEdge.h.

References mlrange_cast().

operator==()

bool VesselEdge::operator==

(

const VesselEdge &

other

)

const

orderSkeletonsAscending()

void VesselEdge::orderSkeletonsAscending

(

)

predNode() [1/2]

VesselNode * VesselEdge::predNode ( )

inline

Definition at line 55 of file mlVesselEdge.h.

predNode() [2/2]

const VesselNode * VesselEdge::predNode ( ) const

inline

Definition at line 56 of file mlVesselEdge.h.

readStateFromTree()

void VesselEdge::readStateFromTree ( TreeNode * parent )

override

Reads the object state from the children of the given parent node.

removeLeadingSkeletons()

void VesselEdge::removeLeadingSkeletons

(

size_t

count

)

removeSkeleton()

void VesselEdge::removeSkeleton

(

size_t

index

)

removeTrailingSkeletons()

void VesselEdge::removeTrailingSkeletons

(

size_t

count

)

setCycle()

void VesselEdge::setCycle ( )

inline

Separate circles in the graph or connections between trees.

Definition at line 77 of file mlVesselEdge.h.

setPred()

void VesselEdge::setPred

(

VesselNode *

node

)

Connect edge-head to node node.

setSTLabel() [1/2]

void VesselEdge::setSTLabel

(

Graph *

pGraph

)

Set label of edge and the attached subtree defined by edge directions according to labels of pGraph.

setSTLabel() [2/2]

void VesselEdge::setSTLabel

(

int

nLabel

)

Set label of edge and the attached subtree defined by edge directions.

setSucc()

void VesselEdge::setSucc

(

VesselNode *

node

)

Connect edge-tail to node node.

skeleton() [1/4]

Skeleton * VesselEdge::skeleton ( size_t index )

inline

Definition at line 144 of file mlVesselEdge.h.

skeleton() [2/4]

const Skeleton * VesselEdge::skeleton ( size_t index ) const

inline

Definition at line 145 of file mlVesselEdge.h.

skeleton() [3/4]

Skeleton * VesselEdge::skeleton ( Vector3 pos, int itemType )

inline

Get the skeleton with minimal distance to pos.

If itemType = Graph::node, the nearest end-skeleton (snap to node) is returned, if itemType = Graph::edge, it is the nearest edge skeleton.

Definition at line 180 of file mlVesselEdge.h.

References skeleton().

Referenced by skeleton().

skeleton() [4/4]

const Skeleton * VesselEdge::skeleton	(	Vector3	pos,
		int	itemType ) const

Get the skeleton with minimal distance to pos.

If itemType = Graph::node, the nearest end-skeleton (snap to node) is returned, if itemType = Graph::edge, it is the nearest edge skeleton.

skeletonsAreAscending()

bool VesselEdge::skeletonsAreAscending

(

)

const

Returns if the skeletons are ordered ascending.

skeletonsAscending() [1/3]

void VesselEdge::skeletonsAscending

(

std::vector< const Skeleton * > &

skeletons

)

const

Return copy of skeletons' addresses in ascending order (graph hierarchy)

skeletonsAscending() [2/3]

void VesselEdge::skeletonsAscending

(

std::vector< Skeleton * > &

skeletons

)

Return copy of skeletons' addresses in ascending order (graph hierarchy)

skeletonsAscending() [3/3]

void VesselEdge::skeletonsAscending

(

std::vector< Skeleton > &

skeletons

)

const

Return copy of skeletons in ascending order (graph hierarchy from pred -> succ)

skeletonsDescending() [1/3]

void VesselEdge::skeletonsDescending

(

std::vector< const Skeleton * > &

skeletons

)

const

Return copy of skeletons' addresses in descending order (graph hierarchy)

skeletonsDescending() [2/3]

void VesselEdge::skeletonsDescending

(

std::vector< Skeleton * > &

skeletons

)

Return copy of skeletons' addresses in descending order (graph hierarchy)

skeletonsDescending() [3/3]

void VesselEdge::skeletonsDescending

(

std::vector< Skeleton > &

skeletons

)

const

Return copy of skeletons in descending order (graph hierarchy from succ -> pred)

smooth()

void VesselEdge::smooth	(	unsigned int	numSmoothingPasses,
		double	positionSmoothingFactor,
		double	radiusSmoothingFactor,
		double	smoothingLimit = 0.0f )

Smooths the skeletons' positions and radii.

No smoothing is done if a smoothing factor is 0 (or the number of smoothing passes = 0), smoothingLimit defines the maximal allowed displacement of skeletons (relative to minimal voxel extension), smoothingLimit = 0.0 means no limit.

STATIC_GRAPH_PROPERTY() [1/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		averageMinDistance	,
		AverageMinDistance	)

STATIC_GRAPH_PROPERTY() [2/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		length	,
		Length	)

STATIC_GRAPH_PROPERTY() [3/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		STLength	,
		STLength	)

STATIC_GRAPH_PROPERTY() [4/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		STVolume	,
		STVolume	)

STATIC_GRAPH_PROPERTY() [5/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		volume	,
		Volume	)

STATIC_GRAPH_PROPERTY() [6/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLdouble	,
		weight	,
		Weight	)

STATIC_GRAPH_PROPERTY() [7/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLint	,
		hierarchy	,
		Hierarchy	)

STATIC_GRAPH_PROPERTY() [8/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	MLint	,
		label	,
		Label	)

STATIC_GRAPH_PROPERTY() [9/9]

VesselEdge::STATIC_GRAPH_PROPERTY	(	Vector3	,
		STBarycenter	,
		STBarycenter	)

succNode() [1/2]

VesselNode * VesselEdge::succNode ( )

inline

Get the successor node of this edge.

Definition at line 59 of file mlVesselEdge.h.

succNode() [2/2]

const VesselNode * VesselEdge::succNode ( ) const

inline

Definition at line 60 of file mlVesselEdge.h.

switchDirection()

void VesselEdge::switchDirection

(

)

Change direction of the edge by exchanging pred. and succ. node.

transform()

void VesselEdge::transform

(

const Matrix4 &

m

)

Apply a 4x4 homogeneous transformation matrix to all skeleton positions.

unsetCycle()

void VesselEdge::unsetCycle ( )

inline

Definition at line 78 of file mlVesselEdge.h.

Friends And Related Symbol Documentation

EdgeAnalyser

friend class EdgeAnalyser

friend

Definition at line 36 of file mlVesselEdge.h.

Graph

friend class Graph

friend

Definition at line 37 of file mlVesselEdge.h.

LoadTreeData

friend class LoadTreeData

friend

Definition at line 38 of file mlVesselEdge.h.

---

The documentation for this class was generated from the following file:

• MeVisLab/Standard/Sources/Shared/MLVesselGraph/mlVesselEdge.h