HistogramFeatures

MLModule

genre	Histogram
author	Jan Hendrik Moltz
package	FMEstable/ReleaseMeVis
dll	MLHistogramFeatures
definition	MLHistogramFeatures.def
see also	HistogramParameters
keywords	energy, mean, absolute, deviation, root, mean, squared, skewness, kurtosis

Purpose

Computes advanced first-order features from a histogram.

Usage

Connect a HistogramObject (as computed by Histogram) to inHistogram and press Update.

Details

This modules implements the first-order features from pyradiomics (http://pyradiomics.readthedocs.io/en/latest/features.html#module-radiomics.firstorder) that are not included in HistogramParameters. The input is a histogram, which has to be non-normalized and non-weighted, i.e., it has to contain actual counts of values. The bin width may differ from 1.

In the formulas below let P be the histogram,

and

and let i iterate over all bins.

Windows

Default Panel

Input Fields

inHistogram

name: inHistogram, type: MLBase

Histogram

Parameter Fields

Field Index

[]: Trigger	On Input Change Behavior: Enum	Update: Trigger
Clear: Trigger	Range: Float
doNotClearOnFailedUpdate: Bool	Robust Mean Absolute Deviation: Float
Energy: Float	Root Mean Squared: Float
Entropy (log2): Float	Skewness: Float
Has Valid Output: Bool	Status Code: Enum
Kurtosis: Float	Status Message: String
Mean Absolute Deviation: Float	Uniformity: Float

Visible Fields

Update

name: update, type: Trigger

Initiates update of all output field values.

Clear

name: clear, type: Trigger

Clears all output field values to a clean initial state.

On Input Change Behavior

name: onInputChangeBehavior, type: Enum, default: Clear, deprecated name: shouldUpdateAutomatically,shouldAutoUpdate

Declares how the module should react if a value of an input field changes.

Values:

Title	Name	Deprecated Name
Update	Update	TRUE
Clear	Clear	FALSE

Status Code

name: statusCode, type: Enum, persistent: no

Reflects module’s status (successful or failed computations) as one of some predefined enumeration values.

Values:

Title	Name
Ok	Ok
Invalid input object	Invalid input object
Invalid input parameter	Invalid input parameter
Internal error	Internal error

Status Message

name: statusMessage, type: String, persistent: no

Gives additional, detailed information about status code as human-readable message.

Has Valid Output

name: hasValidOutput, type: Bool, persistent: no

Indicates validity of output field values (success of computation).

[]

name: updateDone, type: Trigger, persistent: no

Notifies that an update was performed (Check status interface fields to identify success or failure).

Energy

name: outEnergy, type: Float, persistent: no

Energy (measure of the magnitude of voxel values in an image)

Entropy (log2)

name: outEntropy2, type: Float, persistent: no

Entropy computed with log2

Range

name: outRange, type: Float, persistent: no

Range

Mean Absolute Deviation

name: outMeanAbsoluteDeviation, type: Float, persistent: no

MAD (mean distance of all intensity values from the mean value)

Robust Mean Absolute Deviation

name: outRobustMeanAbsoluteDeviation, type: Float, persistent: no

Robust MAD (mean distance of all intensity values from the mean value calculated on the subset of image array with gray levels in between, or equal to the 10th and 90th percentile)

where P_{10-90} is the histogram reduced to all bins between the 10th and 90th percentile of P. The percentile computation was reimplemented to match numpy’s version which differs from the Histogram.

Root Mean Squared

name: outRootMeanSquared, type: Float, persistent: no

RMS (square-root of the mean of all the squared intensity values, another measure of the magnitude of the image values.)

Skewness

name: outSkewness, type: Float, persistent: no

Skewness (measures the asymmetry of the distribution of values about the Mean value. Depending on where the tail is elongated and the mass of the distribution is concentrated, this value can be positive or negative.)

Kurtosis

name: outKurtosis, type: Float, persistent: no

Kurtosis (measure of the ‘peakedness’ of the distribution of values. A higher kurtosis implies that the mass of the distribution is concentrated towards the tail(s) rather than towards the mean. A lower kurtosis implies the reverse: that the mass of the distribution is concentrated towards a spike near the mean value.)

Uniformity

name: outUniformity, type: Float, persistent: no

Uniformity (measure of the sum of the squares of each intensity value. This is a measure of the heterogeneity of the values, where a greater uniformity implies a greater heterogeneity or a greater range of discrete intensity values.)

Hidden Fields

doNotClearOnFailedUpdate

name: doNotClearOnFailedUpdate, type: Bool, persistent: no

Prevents automated clear after update failed. This does not affect status fields. It enables the developer to analyze module’s state after failure.