MeVisLab Toolbox Reference
mlSMFTreeTools.h
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1// Copyright (c) Fraunhofer MEVIS, Germany. All rights reserved.
2// **InsertLicense** code
3//----------------------------------------------------------------------------------
5
10//----------------------------------------------------------------------------------
11
12#pragma once
13
14#include "MLDICOMTagsSystem.h"
15#include <mlUtilsSystem.h>
16#include "mlZTUIndex.h"
17#include <DCMTree_Lib.h>
18
19ML_START_NAMESPACE
20
21namespace DICOMTagTools {
22
25MLDICOMTags_EXPORT void getSMFTreeZTUExtent(const DCMTree::StructuredMFPtr smfTree,
26 ZTUIndex& ztu);
27
30MLDICOMTags_EXPORT void getSMFTreeZTUExtent(const DCMTree::Const_StructuredMFPtr smfTree,
31 ZTUIndex& ztu);
32
35MLDICOMTags_EXPORT void getSMFTreeZTUExtent(DCMTree::TreePtr dcmTree,
36 ZTUIndex& ztu);
37
40MLDICOMTags_EXPORT void getSMFTreeZTUExtent(DCMTree::Const_TreePtr dcmTree,
41 ZTUIndex& ztu);
42
44MLDICOMTags_EXPORT DCMTree::Const_StructuredMFPtr convertDCMToSMFTree(DCMTree::Const_TreePtr dcmTree);
45
47MLDICOMTags_EXPORT void extractAllSMFFramesAsDeepCopies(DCMTree::Const_StructuredMFPtr inputSMFTree,
48 std::vector<DCMTree::Const_TreePtr> &frameSet);
49
53MLDICOMTags_EXPORT DCMTree::TreePtr getSMFTreeFrameTreeAtZTU(DCMTree::Const_StructuredMFPtr smfTree,
54 const ZTUIndex& ztu);
55
59MLDICOMTags_EXPORT DCMTree::TreePtr getSMFTreeFrameTreeAtZTU(DCMTree::StructuredMFPtr smfTree,
60 const ZTUIndex& ztu);
61
64MLDICOMTags_EXPORT DCMTree::TreePtr getSMFTreeFrameTreeAtZTU(DCMTree::TreePtr dcmTree,
65 const ZTUIndex& ztu);
66
72MLDICOMTags_EXPORT std::vector<DCMTree::TreePtr> getIndexedNormalSequenceSubTrees(const DCMTree::TreePtr& parentTree,
73 const std::string& tagIdString,
74 const std::string& sequenceEntriesString,
75 DICOMTagTools::ZTUVector* ztuIndexes = nullptr,
76 bool alsoGetNULLTrees=false);
77
83MLDICOMTags_EXPORT std::vector<DCMTree::TreePtr> getSMFSubTreeFramesAtZTUTriplePositions(const DCMTree::TreePtr& parentTree,
84 const std::vector<MLuint32>& ztuTriples,
85 DICOMTagTools::ZTUVector* ztuIndexes = nullptr);
86
96MLDICOMTags_EXPORT std::vector<DCMTree::TreePtr> getSMFSubTreeZTUFrameSlices(const DCMTree::TreePtr& parentTree,
97 const std::string& zSlicesEntriesList,
98 const std::string& tSlicesEntriesList,
99 const std::string& uSlicesEntriesList,
100 DICOMTagTools::ZTUVector* ztuIndexes = nullptr);
101
102}
103ML_END_NAMESPACE
DCMTree_Lib.h
MLDICOMTagsSystem.h
Project global and OS specific declarations.
MLDICOMTags_EXPORT
#define MLDICOMTags_EXPORT
If included by external modules, exported symbols are declared as import symbols.
Definition MLDICOMTagsSystem.h:21
ml::DICOMTagTools::ZTUIndex
Class managing a multi-frame Z, T, and U-dimension plus a string value.
Definition mlZTUIndex.h:26
mlrange_cast
Target mlrange_cast(Source arg)
Generic version of checked ML casts.
Definition mlRangeCasts.h:332
mlZTUIndex.h
Header file of class ZTUIndex managing a multi-frame Z, T, and U-dimension plus a string value.
DCMTree::Const_StructuredMFPtr
boost::shared_ptr< const StructuredMF > Const_StructuredMFPtr
Definition DCMTree_Lib.h:170
DCMTree::StructuredMFPtr
boost::shared_ptr< StructuredMF > StructuredMFPtr
Definition DCMTree_Lib.h:169
DCMTree::Const_TreePtr
boost::shared_ptr< const Tree > Const_TreePtr
Definition DCMTree_Lib.h:73
DCMTree::TreePtr
boost::shared_ptr< Tree > TreePtr
shared pointer to a DCMTree::Tree
Definition DCMTree_Lib.h:72
ml::DICOMTagTools::getSMFTreeFrameTreeAtZTU
MLDICOMTags_EXPORT DCMTree::TreePtr getSMFTreeFrameTreeAtZTU(DCMTree::Const_StructuredMFPtr smfTree, const ZTUIndex &ztu)
Returns a deep-copy of DCMTree at frame position (z,t,u) from constant smfTree if it exists or nullpt...
ml::DICOMTagTools::getSMFTreeZTUExtent
MLDICOMTags_EXPORT void getSMFTreeZTUExtent(const DCMTree::StructuredMFPtr smfTree, ZTUIndex &ztu)
Get extent of the MeVis Structured Multi Frame set of the smfTree in ztu.
ml::DICOMTagTools::convertDCMToSMFTree
MLDICOMTags_EXPORT DCMTree::Const_StructuredMFPtr convertDCMToSMFTree(DCMTree::Const_TreePtr dcmTree)
Convert dcmTree to the returned StructuredSMFTree if possible or throws and DCMtree::Exception.
ml::DICOMTagTools::extractAllSMFFramesAsDeepCopies
MLDICOMTags_EXPORT void extractAllSMFFramesAsDeepCopies(DCMTree::Const_StructuredMFPtr inputSMFTree, std::vector< DCMTree::Const_TreePtr > &frameSet)
Retrieves all frame trees of the input SMFTree as deep-copies and returns their pointers in frameSet.
ml::DICOMTagTools::getSMFSubTreeZTUFrameSlices
MLDICOMTags_EXPORT std::vector< DCMTree::TreePtr > getSMFSubTreeZTUFrameSlices(const DCMTree::TreePtr &parentTree, const std::string &zSlicesEntriesList, const std::string &tSlicesEntriesList, const std::string &uSlicesEntriesList, DICOMTagTools::ZTUVector *ztuIndexes=nullptr)
Returns a vector of DCMTree::TreePtrs of all MeVis SMF subtrees which are described by the combinatio...
ml::DICOMTagTools::ZTUVector
std::vector< ZTUIndex > ZTUVector
A std::vector typedef of ZTUIndexes to describe indexes of handles in the multi-frame Z,...
Definition mlZTUIndex.h:70
ml::DICOMTagTools::getIndexedNormalSequenceSubTrees
MLDICOMTags_EXPORT std::vector< DCMTree::TreePtr > getIndexedNormalSequenceSubTrees(const DCMTree::TreePtr &parentTree, const std::string &tagIdString, const std::string &sequenceEntriesString, DICOMTagTools::ZTUVector *ztuIndexes=nullptr, bool alsoGetNULLTrees=false)
Returns a vector of all DCMTree::TreePtrs indexed by sequenceEntriesString and taken from the sequenc...
ml::DICOMTagTools::getSMFSubTreeFramesAtZTUTriplePositions
MLDICOMTags_EXPORT std::vector< DCMTree::TreePtr > getSMFSubTreeFramesAtZTUTriplePositions(const DCMTree::TreePtr &parentTree, const std::vector< MLuint32 > &ztuTriples, DICOMTagTools::ZTUVector *ztuIndexes=nullptr)
Builds ztuTriples.size()/3 triples from the indexes in the ztuTriples and returns a vector of all DCM...