ML Reference
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A class that offers a TSubImage with a TSubImageCursor. More...
#include <mlTSubImage.h>
Public Member Functions | |
TSubImageWithCursor () | |
Default constructor. | |
TSubImageWithCursor (const TSubImage< DATATYPE > &subImage) | |
Constructor with TSubImage. | |
TSubImageWithCursor (const SubImage &subImage) | |
Constructor with SubImage. | |
TSubImageWithCursor (const TSubImageWithCursor &subImage) | |
Constructor with TSubImageWithCursor. | |
TSubImageWithCursor & | operator= (const TSubImageWithCursor< DATATYPE > &tSubImg) |
Assignment operator to get an identical copy. | |
Positioning and movement of voxel cursor. | |
void | setCursorSubImagePosition (const ImageVector &position) |
Sets cursor to the given position relative to the origin of the subimage region. | |
void | setCursorSubImagePosition (MLint x, MLint y, MLint z) |
Sets cursor to the given 3d position (x , y , z ) relative to the origin of the subimage region. | |
void | setCursorImagePosition (const ImageVector &position) |
Sets cursor to the given 6d position relative to the origin of the complete image region. | |
void | setCursorImagePosition (MLint x, MLint y, MLint z) |
Sets cursor to the given 3d position (x , y , z ) relative to the origin of the complete image region. | |
void | setCursorPosition (const DATATYPE *pointer) |
Sets cursor to the given pointer where pointer is the memory address of the voxel. | |
void | moveCursorByOffset (const ImageVector &offset) |
Moves cursor to cursor position + offset . | |
void | moveCursorByOffset (MLint x, MLint y, MLint z) |
Moves cursor to cursor position + (x , y , z ). | |
void | moveCursorX () |
Moves cursor forward in x direction. | |
void | moveCursorY () |
Moves cursor forward in y direction. | |
void | moveCursorZ () |
Moves cursor forward in z direction. | |
void | moveCursorC () |
Moves cursor forward in c direction. | |
void | moveCursorT () |
Moves cursor forward in t direction. | |
void | moveCursorU () |
Moves cursor forward in u direction. | |
void | reverseMoveCursorX () |
Moves cursor backward in x direction. | |
void | reverseMoveCursorY () |
Moves cursor backward in y direction. | |
void | reverseMoveCursorZ () |
Moves cursor backward in z direction. | |
void | reverseMoveCursorC () |
Moves cursor backward in c direction. | |
void | reverseMoveCursorT () |
Moves cursor backward in t direction. | |
void | reverseMoveCursorU () |
Moves cursor backward in u direction. | |
Get voxel values at cursor position. | |
DATATYPE | getCursorValue () const |
Returns the voxel value at the cursor position. | |
DATATYPE | getCursorValueWithOffset (const ImageVector &offset) const |
Returns the voxel value at (cursor position + offset ) | |
DATATYPE | getCursorValueWithOffset (MLint dx, MLint dy, MLint dz) const |
Returns voxel value at (cursor position + (dx , dy , dz )) | |
Getting the cursor position as pointer to data. | |
Returns current cursor pointer (i.e., returns the memory address of the voxel the cursor points to). | |
DATATYPE * | getCursorPointer () const |
DATATYPE * | getCursorPointerWithOffset (const ImageVector &offset) const |
Returns cursor pointer of voxel given from current cursor shifted by offset . | |
DATATYPE * | getCursorPointerWithOffset (MLint dx, MLint dy, MLint dz) const |
Returns cursor pointer of voxel given from current cursor shifted by (dx , dy , dz ). | |
Set voxel values at cursor position. | |
void | setCursorValue (DATATYPE value) |
Sets the voxel value at cursor position to value . | |
void | setCursorValueWithOffset (const ImageVector &offset, DATATYPE value) |
Sets the voxel value at (cursor position + offset ) to value. | |
void | setCursorValueWithOffset (MLint dx, MLint dy, MLint dz, DATATYPE value) |
Sets voxel value at (cursor position + (dx , dy ,dz )) to value. | |
Public Member Functions inherited from ml::TSubImage< DATATYPE > | |
TSubImage (const SubImageBox &box, MLDataType dataType, void *data) | |
Constructor for an image region with location/extent box , with data type dataType (must fit to DATATYPE!) and the memory address data which hold the image region. | |
TSubImage () | |
Default constructor to build a typed subimage (with an empty box) from scratch. | |
TSubImage (const SubImage &subImage) | |
Constructor to build a typed subimage from an untyped subImage . | |
TSubImage (const TSubImage< DATATYPE > &typedSubImage) | |
Copy constructor to get an identical copy. | |
~TSubImage () override=default | |
Virtual destructor to shut up compiler warnings. | |
TSubImage & | operator= (const TSubImage< DATATYPE > &typedSubImage) |
Assignment operator to get an identical copy. | |
const DATATYPE * | getData () const |
Returns memory address of image region (Overloads method from SubImage) | |
DATATYPE * | getData () |
const DATATYPE * | getSubImagePointer (const ImageVector &position) const |
Returns a pointer to voxel data of image voxel at the 6d position relative to the begin of the subimage region. | |
DATATYPE * | getSubImagePointer (const ImageVector &position) |
const DATATYPE * | getSubImagePointer (MLint x, MLint y, MLint z) const |
Returns a pointer to voxel data of image voxel at 3d position p=(x , y , z ) relative to the begin of the subimage region. | |
DATATYPE * | getSubImagePointer (MLint x, MLint y, MLint z) |
const DATATYPE * | getImagePointer (const ImageVector &position) const |
Returns a pointer to voxel data of image voxel at 6d position position relative to the begin of the complete image region. | |
DATATYPE * | getImagePointer (const ImageVector &position) |
const DATATYPE * | getImagePointer (MLint x, MLint y, MLint z) const |
Returns a pointer to voxel data of image voxel at 3d position p=(x , y , z ) relative to the begin of the complete image region. | |
DATATYPE * | getImagePointer (MLint x, MLint y, MLint z) |
ImageVector | convertPointerToSubImagePosition (DATATYPE *pointer) const |
Returns 6d voxel coordinates corresponding to the memory address pointer . | |
void | convertPointerToSubImagePosition (DATATYPE *pointer, MLint *x, MLint *y, MLint *z) const |
Returns 3d voxel coordinates corresponding to the memory address pointer . | |
ImageVector | convertPointerToImagePosition (DATATYPE *pointer) const |
Returns 6d voxel coordinates corresponding to the memory address pointer . | |
void | convertPointerToImagePosition (DATATYPE *pointer, MLint *x, MLint *y, MLint *z) const |
Returns 3d voxel coordinates corresponding to the memory address pointer . | |
const DATATYPE & | operator[] (const ImageVector &position) const |
Constant reference access to voxel value at the given position . | |
DATATYPE & | operator[] (const ImageVector &position) |
Reference access to voxel value at the given position . | |
void | setSubImageValue (const ImageVector &position, DATATYPE value) |
Sets the voxel value at the given position to the given value where position is relative to the origin of the subimage region. | |
DATATYPE | getSubImageValue (const ImageVector &position) const |
Returns voxel value at the given position where position is relative to the origin of the subimage region. | |
void | setSubImageValue (MLint x, MLint y, DATATYPE value) |
Sets the voxel value at the given position(x , y ) to the given value where the position is relative to the origin of the subimage region. | |
DATATYPE | getSubImageValue (MLint x, MLint y) const |
Returns the voxel value at position (x , y ) where the position is relative to the origin of the subimage region. | |
void | setSubImageValue (MLint x, MLint y, MLint z, DATATYPE value) |
Sets the voxel value at the given position (x , y , z ) to the given value where the positionis relative to the origin of the subimage region. | |
DATATYPE | getSubImageValue (MLint x, MLint y, MLint z) const |
Returns the voxel value at the given position (x , y , z ) where the position is relative to the origin of the subimage region. | |
void | setImageValue (const ImageVector &position, DATATYPE value) |
Sets the 6d voxel at the given position to the given value . | |
DATATYPE | getImageValue (const ImageVector &position) const |
Returns the 6d voxel value from the given position . | |
void | setImageValue (MLint x, MLint y, DATATYPE value) |
Sets the 2d voxel at the given position (x , y ) to the the given value . | |
DATATYPE | getImageValue (MLint x, MLint y) const |
Returns the 2d voxel value from the given position (x , y ). | |
void | setImageValue (MLint x, MLint y, MLint z, DATATYPE value) |
Sets the 3d voxel at the given position (x , y , z ) to the given value . | |
DATATYPE | getImageValue (MLint x, MLint y, MLint z) const |
Returns the 3d voxel value from given position (x , y , z ). | |
MLint | calculateMinMax (DATATYPE &minValue, DATATYPE &maxValue, const SubImageBox *const validBox=nullptr) const |
Scans subimage and determines minimum and maximum values of the region which is part of subimage box and of validBox . | |
template<typename FROM_DATATYPE > | |
void | copySubImageReorderColorPlanesToInterleaved (const TSubImage< FROM_DATATYPE > &typedFromImage, const ScaleShiftData &scaleShiftData) |
Implements special case for void copySubImageTyped(const TSubImage<FROM_DATATYPE> &typedFromImg,
const ScaleShiftData& scaleShiftData) where color planes shall be interleaved instead of in planes. | |
template<typename FROM_DATATYPE > | |
void | copySubImageTyped (const TSubImage< FROM_DATATYPE > &typedFromImg, const ScaleShiftData &scaleShiftData) |
Copies image data from the subimage fromImg into the overlapping region of this subimage. | |
void | fill (DATATYPE value) |
Sets all voxel values in subimage to value . | |
void | fillBordersWithValue (const SubImageBox &box, DATATYPE fillValue) |
Fills all regions with fillValue which are not covered by box . | |
void | fillInvalidRegionWithValue (DATATYPE value) |
Fills the invalid region (everything outside of getValidRegion()) with the given value . | |
void | fillInvalidRegionWithBorderValues () |
Fills the invalid region (everything outside of getValidRegion()) with the values on the borders of the valid region. | |
Public Member Functions inherited from ml::SubImage | |
const SubImageBox & | getBox () const |
Returns the box describing the origin/extent of the subimage. | |
void | setSourceImageExtent (const ImageVector &extent) |
Sets the image extent of the source image that was used to create this SubImage to extent . | |
ImageVector | getSourceImageExtent () const |
Returns the image extent of the source image that was used to create this SubImage. | |
SubImageBox | getValidRegion () const |
Returns the valid region of the SubImage, which is defined by the intersection of the SubImage::getBox() and the SubImageBox(ImageVector(0), SubImage::getSourceImageExtent()-1). | |
MLint | getNumVoxels () const |
Returns number of voxels in (sub)image. | |
MLint | getSizeInBytes () const |
Returns number of potential bytes in (sub)image. | |
ImageVector | getStride () const |
Returns a stride vector to address the memory efficiently. | |
MLint | getOffset (const ImageVector &voxelPosition) const |
Returns the array index offset from the origin (0,0,0,0,0,0) to the voxelPosition . | |
void | setDataType (MLDataType dataType) |
Overwrite inherited setDataType method to set type of data to dataType . | |
MLDataType | getDataType () const |
Return type of image data. | |
const MLTypeInfos * | getDataTypeInfos () const |
Get MLTypeInfos for image data type. | |
MLEXPORT ImageProperties | toImageProperties () const |
Converts the Subimage's datatype and extend to an ImageProperties object. | |
MLEXPORT void | setFromImageProperties (const ImageProperties &imageProperties) |
Sets the image box and datatype from the imageProperties extent and datatype. | |
void | toStream (std::ostream &ostr) const |
SubImage () | |
Constructor: Creates a subimage with no data. | |
SubImage (const SubImage &si) | |
Copy constructor to get identical copy. | |
SubImage (const SubImageBox &box, MLDataType datatype, void *data=nullptr) | |
Constructor for a rectangular 6d image region with position and extent given by box, with data type datatype and memory given by the pointer data. | |
SubImage (const SubImage &si, const ImageVector &offset) | |
Copy constructor to get identical copy. | |
virtual | ~SubImage ()=default |
Virtual destructor to suppress compiler warnings. | |
SubImage & | operator= (const SubImage &si) |
Assignment operator to get identical copy. | |
void | setBox (const SubImageBox &subImageBox) |
Sets a rectangular 6d region of the subimage to subImageBox . | |
void | setBox (const ImageVector &imageExtent) |
Sets a rectangular 6d region of the subimage to imageExtent . | |
void | translate (const ImageVector &offset) |
Translates the box of the subimage by adding the vector offset . | |
const ImageVector & | getOrigin () const |
Returns the origin of the subimage (which is identical to getBox().v1). | |
void | setOrigin (const ImageVector &newOrigin) |
Sets the origin of the subimage (which moves the box of the subimage to newOrigin ). | |
ImageVector | getExtent () const |
Returns the extent of the subimage (which is identical to getBox().getExtent()). | |
void | setExtent (MLint x, MLint y, MLint z=1, MLint c=1, MLint t=1, MLint u=1) |
Sets the extent of the subimage (which also changes the strides) to newExtent . | |
void | setExtent (const ImageVector &newExtent) |
Sets the extent of the subimage (which also changes the strides) to newExtent . | |
SubImageBox | getBoxFromExtent () const |
Returns size of image as box with origin 0. | |
SubImageBox | getBoxFromImageExtent () const |
ImageVector | getImageExtent () const |
void | setImageExtent (const ImageVector &newExtent) |
void * | getSubImagePointer (const ImageVector &voxelPosition) const |
Returns pointer to voxel data of image voxel at 6d voxelPosition relative to the begin of the subimage region. | |
void * | getSubImagePointer (MLint x, MLint y, MLint z) const |
Returns pointer to voxel data of image voxel at 3d position p=(x ,y ,z ) relative to the begin of the subimage region. | |
void * | getImagePointer (const ImageVector &voxelPosition) const |
Returns pointer to voxel data of image voxel at 6d position voxelPosition relative to the begin of the complete image region. | |
void * | getImagePointer (MLint x, MLint y, MLint z) const |
Returns pointer to voxel data of image voxel at 3d position p=(x , y , z ) relative to the begin of the complete image region. | |
MLEXPORT void | copySubImage (const SubImage &fromImage, const ScaleShiftData &scaleShiftData) |
Copies image data from the subimage fromImage into the overlapping region of this subimage. | |
MLEXPORT void | copySubImage (const SubImage &fromImage) |
Implements special case for void copySubImage(const TSubImage<FROM_DATATYPE> &typedFromImg,
const ScaleShiftData& scaleShiftData) where scaleShiftData is default. | |
bool | isValidSubImagePosition (const ImageVector &voxelPosition) const |
Returns true if 6d voxelPosition is a valid position within subimage region, i.e., if voxelPosition is within (0,0,0,0,0,0) and subimage extents. | |
bool | isValidSubImagePosition (MLint x, MLint y, MLint z) const |
Returns true if 3d position p=(x , y , z ) is a valid position within subimage region, i.e., if the position is within (0,0,0) and subimage extents. | |
bool | isValidImagePosition (const ImageVector &voxelPosition) const |
Returns true if 6d voxelPosition is a valid position within subimage region, i.e., if voxelPosition is within subImgBox.v1 and subImgBox.v2. | |
bool | isValidImagePosition (MLint x, MLint y, MLint z) const |
Returns true if 3d position p=(x , y , z ) is a valid position within subimage region, i.e., if the position is within subImgBox.v1 and subImgBox.v2. | |
MLEXPORT void | allocate (MLMemoryErrorHandling handleFailure) |
Allocate data with MLAlloc(). | |
MLEXPORT void | allocateAsMemoryBlockHandle (MLMemoryErrorHandling handleFailure=ML_RETURN_NULL) |
Allocate data using the ML memory manager. For failure handing, see SubImage::allocate(). | |
MLEXPORT void | free () |
Frees data pointed to by getData() with MLFree(). | |
MLEXPORT bool | isOneValued () const |
Returns true if all page voxels have the same value or if the page contains only 1 voxel. | |
MLEXPORT MLint | calculateMinMax (MLdouble &minValue, MLdouble &maxValue, const SubImageBox *const validBox=nullptr) const |
Scans subimage and determines minimum and maximum values on region which is part of subimage box and of validBox. | |
MLEXPORT void | compare (const SubImage &subImage2, bool *regionsMatch, bool *dataTypesMatch, bool *thisBoxIsPartOfRegion2, bool *region2IsPartOfThisBox, bool *overlapHasSameValues, ImageVector *firstMismatchPos) const |
Compare two subimages with respect to their regions and their contents. | |
MLEXPORT void | fill (MLdouble value) |
Fills the subimage with a value cast to the data type of the subimage. | |
MLEXPORT void | fillWithTypeData (const MLTypeData *value) |
Fills the subimage with a value given as MLTypeData. | |
MLEXPORT void | fillBordersWithScalarValue (const SubImageBox &box, MLdouble fillValue) |
Fill all regions with the fill value fillValue which are not covered by box. | |
MLEXPORT void | fillBordersWithTypeData (const SubImageBox &box, const MLTypeData *fillValue) |
Fills all regions with the fill value fillValue which are not covered by box . | |
MLEXPORT void | fillBordersWithInputValues (const SubImageBox &box, const SubImage &inputSubImage) |
Fills all regions with values from inputSubImage which are not covered by box , however, only valid regions of inputSubImage are read. | |
MLEXPORT void | fillBordersWithBorderValues (const SubImageBox &box) |
Each voxel of which is not inside box is filled with the nearest voxel which is inside box . | |
void | fillInvalidRegionWithScalarValue (MLdouble value) |
Fills the invalid region (everything outside of getValidRegion()) with the given value . | |
void | fillInvalidRegionWithTypeData (const MLTypeData *value) |
Fills the invalid region (everything outside of getValidRegion()) with the given value . | |
void | fillInvalidRegionWithBorderValues () |
Fills the invalid region (everything outside of getValidRegion()) with the values on the borders of the valid region. | |
MLEXPORT bool | isValid () const |
Returns 1(=true) if image region and data is valid. | |
void * | getData () const |
Returns the memory address of the memory managed by the subimage. | |
MLEXPORT void | setData (void *data) |
Sets data as a new memory block for the subimage. | |
MLEXPORT void | setDataFromMemoryBlockHandle (const MLMemoryBlockHandle &data) |
Sets the managed data from a given MLMemoryBlockHandle, the sub image will store this handle and thus reference count the memory managed by the handle as long as the SubImage stays alive. | |
const MLMemoryBlockHandle & | getMemoryBlockHandle () const |
Returns the memory block handle that manages the data of this SubImage if it has been set via setDataFromMemoryBlockHandle(). | |
Additional Inherited Members | |
Public Types inherited from ml::TSubImage< DATATYPE > | |
typedef DATATYPE | ComponentType |
A typedef to "export" the type of voxels components. | |
typedef TSubImageCursor< DATATYPE > | Cursor |
A read/write cursor. | |
typedef ConstTSubImageCursor< DATATYPE > | ConstCursor |
A read-only cursor. | |
Static Public Member Functions inherited from ml::SubImage | |
static MLEXPORT MLint | coordToIndex (MLint x, MLint y, MLint z, MLint c, MLint t, MLint u, const ImageVector &size) |
Converts the coordinate (x , y , z , c , t ,u ) to an index into an image with 6D extents given by size . | |
static MLEXPORT MLint | coordToIndex (const ImageVector &voxelPosition, const ImageVector &size) |
Converts the coordinate voxelPosition into the image with extents size to an index. | |
static MLEXPORT ImageVector | indexToCoord (MLint index, const ImageVector &extent) |
Converts an index into an array with extents extent to a coordinate. | |
Protected Member Functions inherited from ml::SubImage | |
void | _calcFillAreaParams (const SubImageBox &box, const SubImageBox &maxValidInputRegion, ImageVector &boxV1, ImageVector &boxV2, ImageVector &outputTSubImageV1, ImageVector &outputTSubImageV2, MLint &fullLineLenX, MLint &fullLineLenXB, MLint &leftLineStartX, MLint &leftLineLenX, MLint &leftLineLenXB, MLint &rightLineStartX, MLint &rightLineLenX, MLint &rightLineLenXB) |
Helper method to calculate important parameters for page based border filling. | |
void | _copySubImageGeneric (const SubImage &fromImage, const ScaleShiftData &scaleShiftData) |
Generic, non-optimized version of copySubImage. | |
const MLTypeInfos * | _getDataTypeInfos (MLDataType dt) const |
Get MLTypeInfos for used data types, indicates error if type is not registered. | |
Protected Attributes inherited from ml::SubImage | |
SubImageBox | _box |
The box of the subimage. | |
ImageVector | _sourceImageExtent |
The extent of the source image, which is used for getValidRegion() | |
void * | _data |
Memory chunk managed by this subimage. | |
MLMemoryBlockHandle | _memoryBlock |
Memory block used by this subimage. | |
ImageVector | _stride |
Stride vector to address the memory efficiently. | |
MLDataType | _dataType |
Datatype of the image. | |
A class that offers a TSubImage with a TSubImageCursor.
This class should only be used in legacy code to keep old code working.
Definition at line 990 of file mlTSubImage.h.
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Default constructor.
Definition at line 996 of file mlTSubImage.h.
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Constructor with TSubImage.
Definition at line 1000 of file mlTSubImage.h.
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Constructor with SubImage.
Definition at line 1005 of file mlTSubImage.h.
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Constructor with TSubImageWithCursor.
Definition at line 1010 of file mlTSubImage.h.
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Definition at line 1094 of file mlTSubImage.h.
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Returns cursor pointer of voxel given from current cursor shifted by offset
.
Definition at line 1096 of file mlTSubImage.h.
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Returns cursor pointer of voxel given from current cursor shifted by (dx
, dy
, dz
).
Definition at line 1098 of file mlTSubImage.h.
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Returns the voxel value at the cursor position.
Definition at line 1081 of file mlTSubImage.h.
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Returns the voxel value at (cursor position + offset
)
Definition at line 1083 of file mlTSubImage.h.
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Returns voxel value at (cursor position + (dx
, dy
, dz
))
Definition at line 1085 of file mlTSubImage.h.
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Moves cursor to cursor position + offset
.
Definition at line 1042 of file mlTSubImage.h.
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Moves cursor to cursor position + (x
, y
, z
).
Definition at line 1044 of file mlTSubImage.h.
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Moves cursor forward in c direction.
Definition at line 1052 of file mlTSubImage.h.
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Moves cursor forward in t direction.
Definition at line 1054 of file mlTSubImage.h.
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Moves cursor forward in u direction.
Definition at line 1056 of file mlTSubImage.h.
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Moves cursor forward in x direction.
Definition at line 1046 of file mlTSubImage.h.
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Moves cursor forward in y direction.
Definition at line 1048 of file mlTSubImage.h.
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Moves cursor forward in z direction.
Definition at line 1050 of file mlTSubImage.h.
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Assignment operator to get an identical copy.
Note that only the pointer to the data is copied, and NOT the data itself.
Definition at line 1016 of file mlTSubImage.h.
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Moves cursor backward in c direction.
Definition at line 1064 of file mlTSubImage.h.
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Moves cursor backward in t direction.
Definition at line 1066 of file mlTSubImage.h.
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Moves cursor backward in u direction.
Definition at line 1068 of file mlTSubImage.h.
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Moves cursor backward in x direction.
Definition at line 1058 of file mlTSubImage.h.
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Moves cursor backward in y direction.
Definition at line 1060 of file mlTSubImage.h.
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Moves cursor backward in z direction.
Definition at line 1062 of file mlTSubImage.h.
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Sets cursor to the given 6d position
relative to the origin of the complete image region.
I.e., the position p=getBox.v1() is considered the origin of the subimage region.
Definition at line 1035 of file mlTSubImage.h.
References _ML_TSUBIMG_SUBDOT6.
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Sets cursor to the given 3d position (x
, y
, z
) relative to the origin of the complete image region.
I.e., the position p=getBox.v1() is considered the origin of the subimage region.
Definition at line 1038 of file mlTSubImage.h.
References _ML_TSUBIMG_SUBDOT3.
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Sets cursor to the given pointer
where pointer
is the memory address of the voxel.
Definition at line 1040 of file mlTSubImage.h.
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Sets cursor to the given position
relative to the origin of the subimage region.
I.e., the position (0,0,0,0,0,0) is considered the origin of the subimage.
Definition at line 1029 of file mlTSubImage.h.
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Sets cursor to the given 3d position (x
, y
, z
) relative to the origin of the subimage region.
I.e., the position (0,0,0,0,0,0) is considered the origin of the subimage.
Definition at line 1032 of file mlTSubImage.h.
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Sets the voxel value at cursor position to value
.
Definition at line 1110 of file mlTSubImage.h.
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Sets the voxel value at (cursor position + offset
) to value.
Definition at line 1112 of file mlTSubImage.h.
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Sets voxel value at (cursor position + (dx
, dy
,dz
)) to value.
Definition at line 1114 of file mlTSubImage.h.