CSOFilter¶

MLModule¶

genre	`CSOModule`
author	`MeVis Medical Solutions AG`
package	`MeVisLab/Standard`
dll	`MLCSOModules`
definition	MLCSOModules.def
see also	`CSOManager`
keywords	`contour`, `group`, `attributes`, `subset`, `info`, `query`

Purpose¶

The module CSOFilter filters an input CSOList by some criteria and generates a filtered copy as an output list.

Usage¶

Adjust the filter criteria to your needs and either perform the filtering manually or let the filtering be performed at certain notifications.

Details¶

The module offers two ways of adjusting filtering criteria:

A list of identifiers for either CSOs or CSOGroups can be entered manually or automatically,
CSOs can be filtered that meets certain conditions like they are selected or should be voxelized (CSOVoxelizeContours and CSOGenerateSmoothSurfaceFromSparseContours).

Note that the module fills in the lists of identifiers itself if the second way of setting up the filtering constraints is chosen.

The resulting CSOList can contain both, CSOs and CSOGroups, regardless if only CSO identifiers or only CSOGroup identifiers are provided. If a CSO is identified and copied to the output, its embracing CSOGroup is copied as well. And if a certain CSOGroup is identified, then all its contained CSOs are copied to the output list, too.

Providing a list of identifier string¶

If a list of identifiers, separated by spaces, is provided, either by filling the CSO input or the CSOGroup input string, the intended meaning of these strings can also be adjusted. For CSOs, the list of strings can be interpreted as being a list of ids, labels, descriptions, substrings of labels, substrings of descriptions, timepoints or types, subtypes or creator ids (all set by the processors and generators). For CSOGroups, only ids, labels, descriptions, substrings of labels and substrings of descriptions are available.

Using substrings plays the role of using wild cards, i.e. if there are three CSOGroups with the labels tumor1, tumor2 and liver, and the input list for CSOGroups contains only tumor and the strings are evaluated as being substrings of labels, the first two groups are identified, while giving just an r with the same settings, all the groups are identified.

The module offers the possibility to choose between including and excluding the identified objects. If an input CSOList consists of three CSOs with the ids 1,2 and 3, and the CSO identifier string is filled with only a 1 (and the string is evaluated as a list of identifiers), a setting to include would result in an output CSOList consisting of only the CSO with the id 1, while a setting to exclude would result in a CSOList containing all the CSOs with ids not being 1, i.e. of the CSOs with ids 2 and 3.

For enhancing the lucidity, the ids of all output CSOs and CSOGroups are provided on the modul’s GUI.

The fields for the string lists for CSOs or CSOGroups can be filled with all existing ids by pressing an according button on the GUI. Note that the module does not automatically set the evaluation mode to ids. The lists of strings can also be cleared by pressing a button on the GUI.

Using the automatic filter mechanism¶

Here, four filtering options are available: All Selected, All Voxelize, All Shown and All Editable. All of those allude to CSOs, not to CSOGroups. If a notification is registered in the network, and at least one of the four options is checked, the output list is filtered by the adjusted options. Note that the automatic filling is internally evaluated after the manual set lists, so the manual entries are eventually replaced by entries generated on base of the automatic filling.

Actions¶

The filtered CSOs can be modified after being copied.

Note that all the filtered CSOs will be changed in the same way, so for example, if the setting of the color green to CSOs is enabled, all the resulting CSOs that are filtered will be rendered in a green color.

Tips¶

Note that in the output (filtered) CSOList, the ids of CSOs and CSOGroups are always sorted ascending.

Typically, the ids of CSOs and CSOGroups of the input (to be filtered) CSOList are also sorted ascending, but if this is not the case for any reason, the output CSOList’s ids of objects will be sorted ascending nevertheless.

Windows¶

Default Panel¶

../../../Modules/ML/MLCSOModules/mhelp/Images/Screenshots/CSOFilter._default.png

Input Fields¶

inputCSOList¶

name: inputCSOList, type: CSOList(MLBase)¶: The CSOList that is to be filtered.

For accessing this object via scripting see the Scripting Reference: MLCSOListWrapper.

Output Fields¶

outputCSOList¶

name: outputCSOList, type: CSOList(MLBase), deprecated name: outCSOList¶: A filtered copy of the input CSOList.

For accessing this object via scripting see the Scripting Reference: MLCSOListWrapper.

Parameter Fields¶

Field Index¶

`Add All Existing CSOs`: `Trigger`	`Filter Mode: (groupFilterMode)`: `Enum`	`Target Group Seed Point Size`: `Float`
`Add All Existing Groups`: `Trigger`	`Filter Mode: (csoFilterMode)`: `Enum`	`Target Group Seed Point Style`: `Enum`
`All editable (autoAddAllEditableCSO)`: `Bool`	`Group Ids:`: `String`	`Target Path Point Alpha`: `Float`
`All editable (autoAddAllEditableGroup)`: `Bool`	`Input (inputGroupString)`: `String`	`Target Path Point Brighten Value`: `Float`
`All selected (autoAddAllSelectedCSO)`: `Bool`	`Input (inputCSOString)`: `String`	`Target Path Point Color`: `Color`
`All selected (autoAddAllSelectedGroup)`: `Bool`	`isProcessing`: `Bool`	`Target Path Point Style`: `Enum`
`All shown (autoAddAllShownCSO)`: `Bool`	`Listen to finishing (listenToFinishingCSONotifications)`: `Bool`	`Target Path Point Width`: `Float`
`All shown (autoAddAllShownGroup)`: `Bool`	`Listen to finishing (listenToFinishingGroupNotifications)`: `Bool`	`Target Selected CSO`: `Bool`
`All voxelize (autoAddAllVoxelizeCSO)`: `Bool`	`Listen to moved`: `Bool`	`Target Selected Group`: `Bool`
`All voxelize (autoAddAllVoxelizeGroup)`: `Bool`	`Listen to selection changes (listenToSelectionCSOChangedNotifications)`: `Bool`	`Target Show State`: `Bool`
`Alpha (actionSetPathPointAlpha)`: `Bool`	`Listen to selection changes (listenToSelectionGroupChangedNotifications)`: `Bool`	`Target Time Point Index`: `Integer`
`Alpha (actionSetGroupSeedPointAlpha)`: `Bool`	`Mode`: `Enum`	`Target Voxel Write Mode`: `Enum`
`Auto apply`: `Bool`	`Selected state (actionSetSelectedCSO)`: `Bool`	`Target Voxel Write Value`: `Float`
`Brighten`: `Bool`	`Selected state (actionSetSelectedGroup)`: `Bool`	`Target Voxelize State`: `Bool`
`Clear CSO Input String`: `Trigger`	`Sep.`: `String`	`Time point index`: `Bool`
`Clear Group Input String`: `Trigger`	`Should Compare Case Insensitive`: `Bool`	`Update`: `Trigger`
`Color (actionSetPathPointColor)`: `Bool`	`Show state`: `Bool`	`Voxel write mode`: `Bool`
`Color (actionSetGroupSeedPointColor)`: `Bool`	`Size`: `Bool`	`Voxel write value`: `Bool`
`CSO Ids:`: `String`	`Style (actionSetPathPointStyle)`: `Bool`	`Voxelize state`: `Bool`
`done`: `Trigger`	`Style (actionSetGroupSeedPointStyle)`: `Bool`	`whichInputStringToUse`: `Enum`
`Editable state`: `Bool`	`Target Editable State`: `Bool`	`Width`: `Bool`
`Eval. String As: (groupInputEvaluationMode)`: `Enum`	`Target Group Seed Point Alpha`: `Float`
`Eval. String As: (csoInputEvaluationMode)`: `Enum`	`Target Group Seed Point Color`: `Color`

Visible Fields¶

Mode¶

name: updateMode, type: Enum, default: AutoClear¶: Defines the update mode of this module.

Values:

Title	Name	Description
Off	Off	The module does not update on input field changes or on any notications.
Auto Update	AutoUpdate	The module updates if the input CSOList field is touched (connected or disconnected) and on notifications, depending on the notifications the module is allowed to listen to.
Auto Clear	AutoClear

Auto apply¶

name: autoApply, type: Bool, default: FALSE¶: If checked, the module computes anew on changing any field on the module’s GUI.

Update¶

name: apply, type: Trigger¶: If pressed, the module computes anew.

Input (inputGroupString)¶

name: inputGroupString, type: String¶: Sets the list of input strings that are evaluated according to the setting of Eval. String As:.

Input (inputCSOString)¶

name: inputCSOString, type: String¶: Sets the list of input strings that are evaluated according to the setting of Eval. String As:.

CSO Ids:¶

name: passingCSOIds, type: String, persistent: no¶: Shows the ids of all CSOs that are passing the filter.

Group Ids:¶

name: passingCSOGroupIds, type: String, persistent: no¶: Shows the ids of all CSOGroups that are passing the filter.

Filter Mode: (groupFilterMode)¶

name: groupFilterMode, type: Enum, default: FilterModeInclude¶: Defines the filter mode for the CSOGroups.

Values:

Title	Name	Description
Include	FilterModeInclude	The CSOGroups given by the string in `Input` which is evaluated by `Eval. String As:` are all included in the module’s output.
Exclude	FilterModeExclude	The CSOGroups given by the string in `Input` which is evaluated by `Eval. String As:` are all excluded in the module’s output.

Filter Mode: (csoFilterMode)¶

name: csoFilterMode, type: Enum, default: FilterModeInclude¶: Defines the filter mode for the CSOs.

Values:

Title	Name	Description
Include	FilterModeInclude	The CSOs given by the string in `Input` which is evaluated by `Eval. String As:` are all included in the module’s output.
Exclude	FilterModeExclude	The CSOs given by the string in `Input` which is evaluated by `Eval. String As:` are all excluded in the module’s output.

Sep.¶

name: separatorString, type: String, default: None¶: Sets the separator string used to separate the items to filter.

Eval. String As: (groupInputEvaluationMode)¶

name: groupInputEvaluationMode, type: Enum, default: EvaluationModeIds¶: Defines how the module should evaluate the Input.

Values:

Title	Name	Description
Ids	EvaluationModeIds	The string is expected to contain a list of ids.
Label	EvaluationModeLabel	The string is expected to contain a list of labels.
Description	EvaluationModeDescription	The string is expected to contain a list of descriptions.
Label Sub Str And	EvaluationModeLabelSubStrAnd	CSOGroups are recognized if their label string contains all of the given substrings.
Label Sub Str Or	EvaluationModeLabelSubStrOr	CSOGroups are recognized if their label string contains any of the given substrings.
Description Sub Str And	EvaluationModeDescriptionSubStrAnd	CSOGroups are recognized if their description string contains all of the given substrings.
Description Sub Str Or	EvaluationModeDescriptionSubStrOr	CSOGroups are recognized if their description string contains any of the given substrings.
Timepoint	EvaluationModeTimepoint	The string is expected to contain a list of timepoint indices.

Eval. String As: (csoInputEvaluationMode)¶

name: csoInputEvaluationMode, type: Enum, default: EvaluationModeIds¶: Defines how the module should evaluate the Input.

Values:

Title	Name	Description
Ids	EvaluationModeIds	The string is expected to contain a list of ids.
Label	EvaluationModeLabel	The string is expected to contain a list of labels.
Description	EvaluationModeDescription	The string is expected to contain a list of descriptions.
Label Sub Str And	EvaluationModeLabelSubStrAnd	CSOs are recognized if their label string contains all of the given substrings.
Label Sub Str Or	EvaluationModeLabelSubStrOr	CSOs are recognized if their label string contains any of the given substrings.
Description Sub Str And	EvaluationModeDescriptionSubStrAnd	CSOs are recognized if their description string contains all of the given substrings.
Description Sub Str Or	EvaluationModeDescriptionSubStrOr	CSOs are recognized if their description string contains any of the given substrings.
Timepoint	EvaluationModeTimepoint	The string is expected to contain a list of timepoint indices.
Type	EvaluationModeType	The string is expected to contain a list of CSO types (set by a generating module or processor).
Subtype	EvaluationModeSubtype	The string is expected to contain a list of CSO subtypes (set by a generating module or processor).
Creator Id	EvaluationModeCreatorId	The string is expected to contain a list of CSO creator ids (set by a generating module or processor).

Should Compare Case Insensitive¶

name: shouldCompareCaseInsensitive, type: Bool, default: FALSE¶: If checked, the string comparisons (label, description) are performed case-insensitive.

Add All Existing Groups¶

name: addAllExistingGroups, type: Trigger¶: If pressed, all existing CSOGroups are added to the output.

Add All Existing CSOs¶

name: addAllExistingCSOs, type: Trigger¶: If pressed, all existing CSOs are added to the output.

Clear Group Input String¶

name: clearGroupInputString, type: Trigger¶: If pressed, the Input field is cleared.

Clear CSO Input String¶

name: clearCSOInputString, type: Trigger¶: If pressed, the Input field is cleared.

All selected (autoAddAllSelectedCSO)¶

name: autoAddAllSelectedCSO, type: Bool, default: FALSE¶: If pressed, all selected CSOs are added to the output.

All selected (autoAddAllSelectedGroup)¶

name: autoAddAllSelectedGroup, type: Bool, default: FALSE¶: If pressed, all selected CSOGroups are added to the output.

All shown (autoAddAllShownCSO)¶

name: autoAddAllShownCSO, type: Bool, default: FALSE¶: If pressed, all shown/visible CSOs are added to the output.

All shown (autoAddAllShownGroup)¶

name: autoAddAllShownGroup, type: Bool, default: FALSE¶: If pressed, all shown/visible CSOGroups are added to the output.

All voxelize (autoAddAllVoxelizeCSO)¶

name: autoAddAllVoxelizeCSO, type: Bool, default: FALSE¶: If pressed, all CSOs that are to be voxelized are added to the output.

All voxelize (autoAddAllVoxelizeGroup)¶

name: autoAddAllVoxelizeGroup, type: Bool, default: FALSE¶: If pressed, all CSOGroups that are to be voxelized are added to the output.

All editable (autoAddAllEditableCSO)¶

name: autoAddAllEditableCSO, type: Bool, default: FALSE¶: If pressed, all editable CSOs are added to the output.

All editable (autoAddAllEditableGroup)¶

name: autoAddAllEditableGroup, type: Bool, default: FALSE¶: If pressed, all editable CSOGroups are added to the output.

Color (actionSetPathPointColor)¶

name: actionSetPathPointColor, type: Bool, default: FALSE, deprecated name: actionSetColor¶: If checked, all output CSOs are colored as set in Target Path Point Color.

Alpha (actionSetPathPointAlpha)¶

name: actionSetPathPointAlpha, type: Bool, default: FALSE, deprecated name: actionSetAlpha¶: If checked, all output CSOs have an alpha value as set in Target Path Point Alpha.

Brighten¶

name: actionSetPathPointBrighten, type: Bool, default: FALSE, deprecated name: actionSetBrighten¶: If checked, all output CSOs will be brightened by the value set in Target Path Point Brighten Value.

Style (actionSetPathPointStyle)¶

name: actionSetPathPointStyle, type: Bool, default: FALSE, deprecated name: actionSetLineStyle¶: If checked, all output CSOs will have the line style set as in Target Path Point Style.

Width¶

name: actionSetPathPointWidth, type: Bool, default: FALSE, deprecated name: actionSetLineWidth¶: If checked, all output CSOs will have a line width as set in Target Path Point Width.

Voxel write mode¶

name: actionSetVoxelWriteMode, type: Bool, default: FALSE¶: If checked, all output CSOs will have a voxel write mode as set in Target Voxel Write Mode.

Voxel write value¶

name: actionSetVoxelWriteValue, type: Bool, default: FALSE¶: If checked, all output CSOs will have a voxel write value as set in Target Voxel Write Value.

Show state¶

name: actionSetShowState, type: Bool, default: FALSE¶: If checked, all output CSOs will have a show state as set in Target Show State.

Voxelize state¶

name: actionSetVoxelizeState, type: Bool, default: FALSE¶: If checked, all output CSOs will have a voxelize state as set in Target Voxelize State.

Editable state¶

name: actionSetEditableState, type: Bool, default: FALSE¶: If checked, all output CSOs will have an editable state as set in Target Editable State.

Time point index¶

name: actionSetTimePointIndex, type: Bool, default: FALSE¶: If checked, all output CSOs will have a timepoint index as set in Target Time Point Index.

Selected state (actionSetSelectedCSO)¶

name: actionSetSelectedCSO, type: Bool, default: FALSE¶: If checked, all output CSOs will have a selection state as set in Target Selected CSO.

Selected state (actionSetSelectedGroup)¶

name: actionSetSelectedGroup, type: Bool, default: FALSE¶: If checked, all output CSOGroups will have a selection state as set in Target Selected Group.

Color (actionSetGroupSeedPointColor)¶

name: actionSetGroupSeedPointColor, type: Bool, default: FALSE, deprecated name: actionSetGroupMarkerColor¶: If checked, all output CSOGroups will overwrite the seed point color of the containing CSOs.

Style (actionSetGroupSeedPointStyle)¶

name: actionSetGroupSeedPointStyle, type: Bool, default: FALSE, deprecated name: actionSetGroupMarkerMode¶: If checked, all output CSOGroups will overwrite the seed point of the containing CSOs.

Size¶

name: actionSetGroupSeedPointSize, type: Bool, default: FALSE, deprecated name: actionSetGroupMarkerSize¶: If checked, all output CSOGroups will overwrite the seed point size of the containing CSOs.

Alpha (actionSetGroupSeedPointAlpha)¶

name: actionSetGroupSeedPointAlpha, type: Bool, default: FALSE, deprecated name: actionSetGroupMarkerAlpha¶: If checked, all output CSOGroups will overwrite the seed point alpha of the containing CSOs.

Target Path Point Color¶

name: targetPathPointColor, type: Color, default: 1 1 1, deprecated name: targetColor¶: Sets the color of filtered CSOs if the field Color is checked.

Target Path Point Alpha¶

name: targetPathPointAlpha, type: Float, default: 1, deprecated name: targetAlphaValue¶: Sets the alpha value of the filtered CSOs if the field Alpha is checked.

Target Path Point Brighten Value¶

name: targetPathPointBrightenValue, type: Float, default: 1, deprecated name: targetBrightenValue¶: Sets the brighten value of the filtered CSOs if the field Brighten is checked.

Target Path Point Style¶

name: targetPathPointStyle, type: Enum, default: LineStyleSolid, deprecated name: targetLineStyle¶: Defines the line style of filtered CSOs if the field Style is checked.

Values:

Title	Name
None	LineStyleNone
Solid	LineStyleSolid
Dashed	LineStyleDashed
Dotted	LineStyleDotted
Short Dashed	LineStyleShortDashed

Target Path Point Width¶

name: targetPathPointWidth, type: Float, default: 1, deprecated name: targetLineWidth¶: The line width of filtered CSOs if the field Width is checked.

Target Voxel Write Mode¶

name: targetVoxelWriteMode, type: Enum, default: VoxelWriteModeModule¶: Defines the voxel write mode of the filtered CSOs if the field Voxel write mode is checked.

Values:

Title	Name
Id	VoxelWriteModeId
Const	VoxelWriteModeConst
Const Plus Id	VoxelWriteModeConstPlusId
Module	VoxelWriteModeModule

Target Voxel Write Value¶

name: targetVoxelWriteValue, type: Float, default: 1024¶: Sets the voxel write value of the filtered CSOs if the field Voxel write value is checked.

Target Show State¶

name: targetShowState, type: Bool, default: TRUE¶: Sets the show state of the filtered CSOs if the field Show state is checked.

Target Voxelize State¶

name: targetVoxelizeState, type: Bool, default: TRUE¶: Sets the voxelize state of the filtered CSOs if the field Voxelize state is checked.

Target Editable State¶

name: targetEditableState, type: Bool, default: TRUE¶: Sets the editable state of the filtered CSOs if the field Editable state is checked.

Target Time Point Index¶

name: targetTimePointIndex, type: Integer, default: 0¶: Sets the timepoint index of the filtered CSOs if the field Time point index is checked.

Target Selected CSO¶

name: targetSelectedCSO, type: Bool, default: TRUE¶: Sets the selection state of the filtered CSOs if the field Selected state is checked.

Target Selected Group¶

name: targetSelectedGroup, type: Bool, default: TRUE¶: Sets the selection state of the filtered CSOGroups if the field Selected state is checked.

Target Group Seed Point Color¶

name: targetGroupSeedPointColor, type: Color, default: 1 1 1, deprecated name: targetGroupMarkerColor¶: Sets the seed point color of the filtered CSOGroups if the field Color is checked.

Target Group Seed Point Style¶

name: targetGroupSeedPointStyle, type: Enum, default: MarkerModeRect, deprecated name: targetGroupMarkerMode¶: Sets the seed point style of the filtered CSOGroups if the field Style is checked.

Values:

Title	Name
None	MarkerModeNone
Rect	MarkerModeRect
Circle	MarkerModeCircle
Fixed Circle	MarkerModeFixedCircle
Triangle	MarkerModeTriangle
Filled Rect	MarkerModeFilledRect
Filled Circle	MarkerModeFilledCircle
Filled Triangle	MarkerModeFilledTriangle
Dashed Rectangle	MarkerModeDashedRectangle

Target Group Seed Point Size¶

name: targetGroupSeedPointSize, type: Float, default: 2, deprecated name: targetGroupMarkerSize¶: Sets the seed point size of the filtered CSOGroups if the field Size is checked.

Target Group Seed Point Alpha¶

name: targetGroupSeedPointAlpha, type: Float, default: 1, deprecated name: targetGroupMarkerAlpha¶: Sets the seed point alpha of the filtered CSOGroups if the field Alpha is checked.

Listen to finishing (listenToFinishingCSONotifications)¶

name: listenToFinishingCSONotifications, type: Bool, default: TRUE¶: If checked, the module listens to CSO finished notifications if the field Mode is set to Auto Update.

Listen to finishing (listenToFinishingGroupNotifications)¶

name: listenToFinishingGroupNotifications, type: Bool, default: TRUE¶: If checked, the module listens to CSOGroup finished notifications if the field Mode is set to Auto Update.

Listen to selection changes (listenToSelectionCSOChangedNotifications)¶

name: listenToSelectionCSOChangedNotifications, type: Bool, default: TRUE¶: If checked, the module listens to CSO selection notifications if the field Mode is set to Auto Update.

Listen to selection changes (listenToSelectionGroupChangedNotifications)¶

name: listenToSelectionGroupChangedNotifications, type: Bool, default: TRUE¶: If checked, the module listens to CSOGroup finished notifications if the field Mode is set to Auto Update.

Listen to moved¶

name: listenToMovedCSONotifications, type: Bool, default: FALSE¶: If checked, the module listens to CSO moved notifications if the field Mode is set to Auto Update.

Hidden Fields¶

isProcessing¶

name: isProcessing, type: Bool, persistent: no¶

done¶

name: done, type: Trigger, persistent: no¶

whichInputStringToUse¶

name: whichInputStringToUse, type: Enum, default: UseInputStringCSO¶

Values:

Title	Name
CSO	UseInputStringCSO
CSOGroup	UseInputStringCSOGroup