Modules by Keyword in Detail

add
ModuleAuthorsTypeGenreDllComment
AddInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationAdds two multivatiate interpolation polynomials.
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
affinity
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
Analysis
ModuleAuthorsTypeGenreDllComment
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
anti-derivative
ModuleAuthorsTypeGenreDllComment
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
antiderivative
ModuleAuthorsTypeGenreDllComment
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
arithmetic
ModuleAuthorsTypeGenreDllComment
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
arithmetics
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
average
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BaseOpMatrix
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
bbox
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
bootstrap
ModuleAuthorsTypeGenreDllComment
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bootstrapping
ModuleAuthorsTypeGenreDllComment
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
bounding
ModuleAuthorsTypeGenreDllComment
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
boundingbox
ModuleAuthorsTypeGenreDllComment
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
box
ModuleAuthorsTypeGenreDllComment
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
buffer
ModuleAuthorsTypeGenreDllComment
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
bundle
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
cache
ModuleAuthorsTypeGenreDllComment
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
cdf
ModuleAuthorsTypeGenreDllComment
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
cluster
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
clustering
ModuleAuthorsTypeGenreDllComment
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
coding
ModuleAuthorsTypeGenreDllComment
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
color
ModuleAuthorsTypeGenreDllComment
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
concat
ModuleAuthorsTypeGenreDllComment
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
concatenate
ModuleAuthorsTypeGenreDllComment
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
connection
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
Container
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
conversion
ModuleAuthorsTypeGenreDllComment
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
convert
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
coordinates
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
count
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
covariance
ModuleAuthorsTypeGenreDllComment
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
crop
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
cropfiberendings
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
Cropping
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
cumulative
ModuleAuthorsTypeGenreDllComment
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
cut
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
density
ModuleAuthorsTypeGenreDllComment
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
derivative
ModuleAuthorsTypeGenreDllComment
DeriveInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationDerives a multivatiate interpolation polynomial with respect to one or several variables.
derive
ModuleAuthorsTypeGenreDllComment
DeriveInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationDerives a multivatiate interpolation polynomial with respect to one or several variables.
dicom
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
difference
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
Diffusion
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
distribution
ModuleAuthorsTypeGenreDllComment
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
divide
ModuleAuthorsTypeGenreDllComment
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
division
ModuleAuthorsTypeGenreDllComment
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
draw
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
DSI
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
DTI
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
SoFiberVisOlaf Konrad, Alexander Köhn, Jan KleinInventorModuleDTIVisualizationSoFiberVis3D visualization of tracked fibers
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
DTIInfo
ModuleAuthorsTypeGenreDllComment
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
evaluate
ModuleAuthorsTypeGenreDllComment
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
expectation
ModuleAuthorsTypeGenreDllComment
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
factor
ModuleAuthorsTypeGenreDllComment
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
feature
ModuleAuthorsTypeGenreDllComment
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
fiber
ModuleAuthorsTypeGenreDllComment
ClusteringAlgorithmsJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringclusters abstract objects represented by an affinity matrix or a feature-space matrix
ColorizeFiberSetJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringcolorize fiber with index i from fiber set according to entry in i-th row of input matrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
FiberSet
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberSetContainer
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
FiberTracking
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
FiberTreeQuery
ModuleAuthorsTypeGenreDllComment
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
field
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
file
ModuleAuthorsTypeGenreDllComment
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
Filter
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
Filtering
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
flow
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
function
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
ge
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
gradient
ModuleAuthorsTypeGenreDllComment
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
gradients
ModuleAuthorsTypeGenreDllComment
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
graph
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
grid
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
HARDI
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
helper
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
histogram
ModuleAuthorsTypeGenreDllComment
Histogram3DInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
image
ModuleAuthorsTypeGenreDllComment
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
index
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
info
ModuleAuthorsTypeGenreDllComment
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
information
ModuleAuthorsTypeGenreDllComment
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
integral
ModuleAuthorsTypeGenreDllComment
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
integrate
ModuleAuthorsTypeGenreDllComment
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
integration
ModuleAuthorsTypeGenreDllComment
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
interpolation
ModuleAuthorsTypeGenreDllComment
AddInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationAdds two multivatiate interpolation polynomials.
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
DeriveInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationDerives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
Histogram3DInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
MultiplyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationMultiplies two multivatiate interpolation polynomials.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
SimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSimplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSlightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a tensor product interpolation polynomial in arbitrarily high space dimension.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
TranslateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationTranslates a multivatiate interpolation polynomial.
isosurface
ModuleAuthorsTypeGenreDllComment
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
length
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
linear
ModuleAuthorsTypeGenreDllComment
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
list
ModuleAuthorsTypeGenreDllComment
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
load
ModuleAuthorsTypeGenreDllComment
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
loop
ModuleAuthorsTypeGenreDllComment
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
LPH
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
manipulate
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
mask
ModuleAuthorsTypeGenreDllComment
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
matrix
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
WeightMatrixByGridJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines affinity matrix using the grid method
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
max
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
min
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
module
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
MPS
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
multilinear
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
multiply
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
MultiplyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationMultiplies two multivatiate interpolation polynomials.
multivariate
ModuleAuthorsTypeGenreDllComment
AddInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationAdds two multivatiate interpolation polynomials.
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
DeriveInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationDerives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
Histogram3DInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
MultiplyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationMultiplies two multivatiate interpolation polynomials.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
SimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSimplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSlightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a tensor product interpolation polynomial in arbitrarily high space dimension.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
TranslateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationTranslates a multivatiate interpolation polynomial.
network
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
NEX
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
node
ModuleAuthorsTypeGenreDllComment
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
nodes
ModuleAuthorsTypeGenreDllComment
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
number
ModuleAuthorsTypeGenreDllComment
FiberInfoAnna Hallerbach, Jan KleinMLModuleFiberTrackingMLFiberUtilsstatistics of fiber bundle
NWV
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
orientation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
partially
ModuleAuthorsTypeGenreDllComment
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
pattern
ModuleAuthorsTypeGenreDllComment
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
pdf
ModuleAuthorsTypeGenreDllComment
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
phantom
ModuleAuthorsTypeGenreDllComment
SoDrawFiberSetOlaf Konrad, Markus HuellebrandInventorModuleDTIOtherSoDrawFiberSetPermits interactive generation of classes of fiber bundles.
philips
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
piecewise
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
GraphLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the graph of a piecewise multilinear function.
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
IntegrateBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationIntegrates a piecewise multilinear function over a given box.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadLinearFunctionTim KroegerMLModuleMLStochasticCollocationLoads a vector of piecewise multilinear functions from a file.
NodesLinearFunctionTim KroegerMLModuleMLStochasticCollocationCreates an XMarkerList containing the nodes of a piecewise multilinear function.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
point
ModuleAuthorsTypeGenreDllComment
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
polynomial
ModuleAuthorsTypeGenreDllComment
AddInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationAdds two multivatiate interpolation polynomials.
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
DeriveInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationDerives a multivatiate interpolation polynomial with respect to one or several variables.
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
Histogram3DInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
HistogramSphereInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a multivariate interpolation polynomial in arbitrarily high space dimension.
ImageListInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationApplies any externally supplied polynomial computation to a list of images.
IntegrateBoxInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial over a given box.
IntegrationInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationIntegrates a multivatiate interpolation polynomial with respect to one or several variables.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
MultiplyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationMultiplies two multivatiate interpolation polynomials.
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
SimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSimplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSlightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SmolyakInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
TensorInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a tensor product interpolation polynomial in arbitrarily high space dimension.
TranslateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationTranslates a multivatiate interpolation polynomial.
probability
ModuleAuthorsTypeGenreDllComment
Histogram3DLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a 3d-valued piecewise linear function.
HistogramLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a PDF and a CDF of a piecewise multilinear function.
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
product
ModuleAuthorsTypeGenreDllComment
MultiplyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationMultiplies two multivatiate interpolation polynomials.
Q-BALL
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
QBALL
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
Quantification
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
query
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
refine
ModuleAuthorsTypeGenreDllComment
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
refinement
ModuleAuthorsTypeGenreDllComment
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
registration
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
resample
ModuleAuthorsTypeGenreDllComment
ResampleLinearFunctionTim KroegerMLModuleMLStochasticCollocationResamples a given piecewise multilinear function with a different (coarser) refinement strategy.
rotation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
save
ModuleAuthorsTypeGenreDllComment
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SaveLinearFunctionTim KroegerMLModuleMLStochasticCollocationSaves a vector of piecewise multilinear functions from a file.
scale
ModuleAuthorsTypeGenreDllComment
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
ScalePointInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationUtility for automatic scaling of an evaluation point for a multivariate interpolation polynomial in arbitrarily high space dimension.
search
ModuleAuthorsTypeGenreDllComment
ModuleSuggestChristoph BrachmannMacroModuleSuggest a module based on most common field connections
select
ModuleAuthorsTypeGenreDllComment
SelectLinearFunctionTim KroegerMLModuleMLStochasticCollocationSelects single piecewise multilinear functions out of a list or concatenates two lists.
set
ModuleAuthorsTypeGenreDllComment
FiberSetContainerToFiberSetJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSetContainer to FiberSet.
FiberSetToFiberSetContainerJan KleinMLModuleFiberTrackingMLFiberUtilsConverts FiberSet to FiberSetContainer
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
setfibercolor
ModuleAuthorsTypeGenreDllComment
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
setfiberness
ModuleAuthorsTypeGenreDllComment
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
Siemens
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
simplify
ModuleAuthorsTypeGenreDllComment
SimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSimplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
SlightlySimplifyInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSlightly simplifys the internal representation of a multivatiate interpolation polynomial, without changing its values.
Smolyak
ModuleAuthorsTypeGenreDllComment
SmolyakInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a multivariate interpolation polynomial in arbitrarily high space dimension, using Smolyak's algorithm.
space
ModuleAuthorsTypeGenreDllComment
FeatureSpaceMatrixJan Klein, Philip Bittihn, Peter LedochowitschMLModuleFiberClusteringMLFiberClusteringdetermines the feature space from a given fiber set
specific
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
sphere
ModuleAuthorsTypeGenreDllComment
HistogramSphereLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes (an approximation to) a histogram of a piecewise linear function with values on the sphere.
stream
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
streamtubes
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
subtract
ModuleAuthorsTypeGenreDllComment
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
sum
ModuleAuthorsTypeGenreDllComment
AddInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationAdds two multivatiate interpolation polynomials.
AddLinearFunctionTim KroegerMLModuleMLStochasticCollocationAdds (or subtracts) several piecewise multilinear functions.
table
ModuleAuthorsTypeGenreDllComment
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
tag
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
Tensor
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
BootstrapJan KleinMLModuleDTIImageProcessingMLDTIFrom a given Siemens DTI data set with more than one repetition, create new artificial data set by bootstrapping method.
DiffusionTensorAnalysisMathias Schlueter, Jan KleinMLModuleDTIImageProcessingMLDTIReconstucts the Diffusion Tensor
DTIInfoJan KleinMLModuleDTIImageProcessingMLDTIIndicates some important DTI parameters like gradients, NEX and manufacturer used for the acquisition process of DTI data.
FiberCacheJan KleinMLModuleFiberTrackingMLFiberUtilsbuffers incoming FiberSets or FiberSetContainers
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FibersBoundingBoxJan KleinMLModuleFiberTrackingMLFiberUtilsdetermines bounding box of fiber set (container)
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
InterpolatePolynomialToLinearFunctionTim KroegerMLModuleMLStochasticCollocationConverts a multivariate polynomial into a piecewise multilinear function.
LoadFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for loading a FiberSet or a FiberSetContainer. Module is much faster than LoadBase/SaveBase solution.
ReduceFibersJan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionModule supports cropping of the endings of fibers, the deletion of short or longer fibers, and the simplification with respect to the number of points per fiber.
SaveFibersJan KleinMLModuleFiberTrackingMLFiberUtilsAllows for saving a FiberSet or a FiberSetContainer. Module is much faster than SaveBase solution.
SetFiberColorDaniel Betz, Jan KleinMLModuleDTIVisualizationMLFiberUtilsExtensionColor values of input image can be mapped to color values of fiber points
SetFibernessJan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionEach fiber point of a given fiber set or fiber set container can be assigned with the corresponding voxel value of an input image
TensorInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationCreates a tensor product interpolation polynomial in arbitrarily high space dimension.
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
test
ModuleAuthorsTypeGenreDllComment
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
threshold
ModuleAuthorsTypeGenreDllComment
ThresholdLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the measure of the subset of points (in the bounding box) on which the value of a piecewise multilinear function is above a given threshold.
trace
ModuleAuthorsTypeGenreDllComment
AverageSiemensDTIJan KleinMLModuleDTIImageProcessingMLDTIDetermines from a given Siemens DTI data set with more than one repetition the average image
Tracking
ModuleAuthorsTypeGenreDllComment
FiberBundleQuantificationSimon Hermann, Jan KleinMLModuleDTIQuantificationMLFiberUtilsExtensionautomatic quantification of DTI parameters using a previously cropped FiberSet
FiberSetFilter3DSimon Hermann, Jan KleinMLModuleFiberTrackingMLFiberUtilsFiber sets can be filtered and cropped by 3D ROIs (defined by XMarkers)
TensorTestPatternOlaf Konrad, Mathias SchlüterMLModuleDTIOtherMLDTIGenerates a tensor / vector valued test pattern
TensorTractographyJan Klein, Olaf Konrad, Mathias SchlüterMLModuleFiberTrackingMLFiberTrackingStableEfficient fiber tracking using global image volume.
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
transformation
ModuleAuthorsTypeGenreDllComment
TensorTransformUwe Siems, Sebastiano BarbieriMLModuleDTIImageProcessingMLDTIRotates tensors/vectors in a tensor/vector image (e.g. after registration)
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
transition
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
translate
ModuleAuthorsTypeGenreDllComment
BoundingBoxLinearFunctionTim KroegerMLModuleMLStochasticCollocationChanges the bounding box of a multilinear function.
TranslateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationTranslates a multivatiate interpolation polynomial.
translation
ModuleAuthorsTypeGenreDllComment
TranslateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationTranslates a multivatiate interpolation polynomial.
tree
ModuleAuthorsTypeGenreDllComment
FiberFromIndexJan KleinMLModuleDTIVisualizationMLFiberTreeDetermines from index vector and fiber set all corresponding fibers. The index vector may be computed by the FiberTreeQuery module.
FiberTreeJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing an octree from a given fiber set or fiber set container. In combination with the module FiberTreeQuery, efficient 3D queries can be performed.
FiberTreeInfoJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for computing the bounding box covering the fibers of a FiberTree.
FiberTreeQueryJan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for efficient 3D queries in a giver FiberTree. Until now, only spherical queries can be done.
IndexArithmetic2Jan KleinMLModuleDTIVisualizationMLFiberTreeThe module allows for performing Boolean operations on two objects of type IndexVector. Index vectors may be computed by the FiberTreeQuery module or just by the IndexArithmetic2 module itself.
tubes
ModuleAuthorsTypeGenreDllComment
FibersToGraphJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of a given fiber set into a graph
Tuch
ModuleAuthorsTypeGenreDllComment
DisplayModuleMatrixJan KleinMLModuleDTIImageProcessingMLDiffusionHelpersDisplays BaseOpMatrix
value
ModuleAuthorsTypeGenreDllComment
EvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationEvaluates a multivatiate interpolation polynomial in arbitrarily high space dimension. Also shows some information bits.
EvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationEvaluates a piecewise multilinear function. Also shows some information bits.
GraphInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationSupplies a value table of an interpolation polynomial as a CurveData object. This naturally only works for polynomials in one variable.
PartiallyEvaluateInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationPartially evaluates a multivatiate interpolation polynomial.
PartiallyEvaluateLinearFunctionTim KroegerMLModuleMLStochasticCollocationPartially evaluates a piecewise multilinear function.
variance
ModuleAuthorsTypeGenreDllComment
CovarianceMatrixInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of three multivariate interpolation polynomials over a given box.
CovarianceMatrixLinearFunctionTim KroegerMLModuleMLStochasticCollocationComputes the covariance matrix and the expectation values of up to four piecewise multilinear functions over their common generic bounding box.
vector
ModuleAuthorsTypeGenreDllComment
TensorShapeExtractMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIStableExtraction of tensor shapes from a tensor field
VectorToColorMathias Schlüter, Jan KleinMLModuleDTIImageProcessingMLDTIVisualization of vector fields by color coding
vendor
ModuleAuthorsTypeGenreDllComment
DecodeVendorSpecificDicomTagsMarcus Barann, Jan KleinMLModuleDICOMMLDTIDecodes vendor specific dicom tags
WeightMatrixByGrid
ModuleAuthorsTypeGenreDllComment
WeightMatrixByGridMacroJan Klein, Peter Ledochowitsch, Philip BittihnMacroModuleFiberClusteringDiagram added to WeightMatrixByGrid for importance function viewing
world
ModuleAuthorsTypeGenreDllComment
TensorTransformAdapterJan KleinMacroModuleAdapts TensorTransform module setting depending on coordinate frame of gradient scheme and registration
wrap
ModuleAuthorsTypeGenreDllComment
WrapFiberSetJan KleinMacroModuleFiberClusteringA fiber set can be wrapped by a colored isosurface.
XMarker
ModuleAuthorsTypeGenreDllComment
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
XMarkerList
ModuleAuthorsTypeGenreDllComment
FiberSetToXMarkerJan KleinMLModuleFiberTrackingMLFiberUtilsconverts all fiber points of given fiber set into a XMarkerList
XMarkersToFibers
ModuleAuthorsTypeGenreDllComment
FlowPathsToFibersJohann DrexlMLModuleMLFiberUtilsConverts flow paths into a fiber set.
XYZ
ModuleAuthorsTypeGenreDllComment
TransformPhilipsDTIJan KleinMLModuleDTIImageProcessingMLDTITransformation and normalization of gradient scheme from various coordinate systems (XYZ, LPH, MPS) into world coordinates (not into NWV)
zero
ModuleAuthorsTypeGenreDllComment
FactorZeroInterpolationPolynomialTim KroegerMLModuleMLStochasticCollocationFactors a zero out of a multivatiate interpolation polynomial.

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Genre 7 genres
Name details 79 names
Keywords details 167 keywords
Tue May 31 19:27:28 2022