CSOFromLabelImageGenerator

MLModule

genre	CSOModule
author	Lars Bornemann
package	FMEstable/ReleaseMeVis
dll	MLCSOMiscModulesStable
definition	MLCSOMiscModulesStable.def
see also	CSOIsoGenerator
keywords	CSO, contour, label, convert

Purpose

This module scans the given input image for existing labels and generates corresponding CSO groups for each label.

Usage

Connect the label image and a CSO container module (CSOManager) and press update.

Windows

Default Panel

Input Fields

input0

name: input0, type: Image

The input label image. 0 is always considered as background value. The image is scanned for all non-zero values and corresponding CSO groups will be generated.

inCSOList

name: inCSOList, type: MLBase

The CSO list where the generated CSOs will be stored

Parameter Fields

Field Index

Add To Group: Enum	Group Label: String	seedPointAlpha: Float
Auto apply: Bool	isProcessing: Bool	seedPointColor: Color
Auto Clear: Bool	Mode: Enum	seedPointSize: Float
Creator Id: Integer	pathPointAlpha: Float	seedPointStyle: Enum
done: Trigger	pathPointColor: Color	Time Point: Integer
Empty group before generation: Bool	pathPointStyle: Enum	Update: Trigger
Generate For All Timepoints: Bool	pathPointWidth: Float	voxelWriteMode: Enum
Group Id: Integer	progress: Float	voxelWriteValue: Float

Visible Fields

Mode

name: updateMode, type: Enum, default: Off

Defines whether the calculation will be started automatically if the input image changes or the calculation has to be started manually

Values:

Title	Name	Description
Off	Off	No automatic (re-)calculation for input image changes.
Auto Update	AutoUpdate	Every input image change will lead to a (re-)calculation

Auto apply

name: autoApply, type: Bool, default: FALSE

If checked, the module computes anew if any field on the GUI is changed.

Update

name: apply, type: Trigger

If pressed, the module computes anew.

Empty group before generation

name: emptyGroupBeforeGeneration, type: Bool, default: FALSE

If checked, the module will empty the CSOGroup where it stores the generated iso contours in.

Add To Group

name: addCSOToGroupMode, type: Enum, default: AddToGroupByLabel

Defines how the module determines in which CSOGroup the generated iso contours should be stored in.

Values:

Title	Name	Description
None	AddToGroupNone	The generated iso contours are not stored in any CSOGroup.
By Label	AddToGroupByLabel	The generated iso contours are stored in a CSOGroup that is given by a label in Group Label. If a CSOGroup with the given label does not already exist, it is created before being filled.
By Id	AddToGroupById	The generated iso contours are stored in a CSOGroup that is given by an id in Group Id. If a CSOGroup with the given id does not already exist, the generated iso contours are not stored in any group.

Group Label

name: addCSOToGroupWithLabel, type: String

Sets the id of the CSOGroup newly generated iso contours should be stored in. If such a CSOGroup does not already exist, the generated CSO will not be stored in any CSOGroup. If “Empty group before generation” is checked, the CSOGroup with this id is emptied before filled again.

Group Id

name: addCSOToGroupWithId, type: Integer, default: -1

Sets the id of the CSOGroup newly generated iso contours should be stored in. If such a CSOGroup does not already exist, the generated CSO will not be stored in any CSOGroup. If Empty group before generation is checked, the CSOGroup with this id is emptied before filled again.

Creator Id

name: id, type: Integer, default: 0

Sets the creator id to the generated iso contours for a later identification. This can be an arbitrary number.

Time Point

name: timePoint, type: Integer, default: 0

Sets the time point for which the CSOs are to be generated.

Generate For All Timepoints

name: generateForAllTimepoints, type: Bool, default: FALSE

If checked, all slices for all available timepoints are scanned.

Auto Clear

name: autoClear, type: Bool, default: FALSE

If checked, the module clears the input CSOList on any image change.

Hidden Fields

isProcessing

name: isProcessing, type: Bool, default: FALSE

done

name: done, type: Trigger

pathPointStyle

name: pathPointStyle, type: Enum, default: LineStyleSolid

Values:

Title	Name
None	LineStyleNone
Solid	LineStyleSolid
Dashed	LineStyleDashed
Dotted	LineStyleDotted
Short Dashed	LineStyleShortDashed

pathPointWidth

name: pathPointWidth, type: Float, default: 1

pathPointColor

name: pathPointColor, type: Color, default: 1 1 0

pathPointAlpha

name: pathPointAlpha, type: Float, default: 1

seedPointStyle

name: seedPointStyle, type: Enum, default: MarkerModeNone

Values:

Title	Name
None	MarkerModeNone
Rect	MarkerModeRect
Circle	MarkerModeCircle

seedPointSize

name: seedPointSize, type: Float, default: 2

seedPointColor

name: seedPointColor, type: Color, default: 0 1 0

seedPointAlpha

name: seedPointAlpha, type: Float, default: 1

voxelWriteMode

name: voxelWriteMode, type: Enum, default: VoxelWriteModeModule

Values:

Title	Name
Id	VoxelWriteModeId
Const	VoxelWriteModeConst
Const Plus Id	VoxelWriteModeConstPlusId
Module	VoxelWriteModeModule

voxelWriteValue

name: voxelWriteValue, type: Float, default: 1024

progress

name: progress, type: Float, default: 0